Difference between revisions of "YifengCui"
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| − | = | + | =APPOINTMENTS= |
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| − | + | Director, High Performance GeoComputing Laboratory, San Diego Supercomputer Center, 2010 - present | |
| − | + | Adjunct Professor, San Diego State University, July, 2009 - present | |
| − | + | Senior Computational Scientist, San Diego Supercomputer Center, 2001-present | |
| + | Postdoctoral Researcher, Scripps Institution of Oceanography, 2000-2001 | ||
| + | Staff Climatologist/Senior Scientific Programmer, Atmospheric Environmental Branch, Environment Canada, Vancouver, 1997-2000 | ||
| + | Research Assistant, Institute of Hydrology, University of Freiburg, Germany, 1993-1996 | ||
| + | Research Engineer, Nanjing Research Institute of Hydrology and Water Resources, Nanjing, China, 1987-1991 | ||
| + | Assistant Engineer, Kunming Hydroelectric Design and Research Institute, Kunming, 1982-1984 | ||
| − | + | =EDUCATION= | |
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| − | + | Ph.D. in Hydrology, University of Freiburg, Germany, 1997 | |
| − | + | M.Sc. in Water Resources and Hydroclimatology, Hohai University, China, 1987 | |
| − | + | B.Sc. in Meteorology, Nanjing Institute of Meteorology, China, 1982 | |
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| − | + | =AWARDS & HONORS= | |
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| − | + | Director of Intel Parallel Computing Center, Oct, 2015 | |
| − | + | NVIDIA Global Impact Award, March, 2015 | |
| − | + | IDC HPC Innovation Excellence Award, June, 2013 | |
| + | TeraGrid Best Visualization Display Award, TeraGrid’11, July 24, 2011 | ||
| + | SciDAC OASCR Visualization Award, May 2011 | ||
| + | ACM Gordon Bell Finalist, Supercomputing’10, New Orleans, Nov 13-19, 2010 | ||
| + | SciDAC OASCR Visualization Award, May 2009 | ||
| + | Excellence Award for Scaling AWM-OLSEN to 40k BG/L processors, SDSC, 2006 | ||
| + | Excellence Award for Parallelization of Regional Spectral Model RSM, SDSC, 2003 | ||
| + | First Place of Science and Technology Progress Award from Ministry of Water Resources of China for joint project Hydrologic Cycles on Climate, 2001 | ||
| + | Postdoctoral Fellowship, Scripps Institution of Oceanography, 2000-2001 | ||
| + | State Baden-Wuerttemberg Graduate Scholarship, Germany, 1994-1996 | ||
| − | + | =SELECTED TALKS AND LECTURES= | |
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| − | + | UCSD SE 290 Seminar, Feb 8, 2016 | |
| − | + | International Workshop on Co-design 2015, Wuxi, Nov 6-8, 2015 (invited) | |
| − | + | GTC’15, San Jose, March 16-20, 2015 (invited) | |
| + | ICTP Symposium on HPC and Data-Intensive Applications in Earth Sciences, Trieste, Nov 13-14, 2014 (invited) | ||
| + | International Workshop on Co-design 2014, Guangzhou, Nov 6-8, 2014 (invited) | ||
| + | MURPA Seminar, UQeensland, Oct 16, 2014 (invited) | ||
| + | US-China-Germany E-Science and Cyberinfrastructure (CHANGES) 2014 Workshop, Beijing, Sept 10-12, 2014 (invited) | ||
| + | OLCF Users Meeting, Oak Ridge, July 22-24, 2014 (invited) | ||
| + | Simula Research Lab, Oslo, July 8, 2014 (invited) | ||
| + | IHPCES’14/ICCS’14, Cairns, June 9-12, 2014 | ||
| + | IGCC HPC Comparison Workshop, San Diego, April 29-30, 2014 (invited) | ||
| + | HPC User Forum Meeting, Santa Fe, April 7-9, 2014 (invited) | ||
| + | Int’l SPNS-2013 Workshop, Tokyo, Dec 5-6, 2013 (Plenary) | ||
| + | University of Tokyo ASE Workshop, Tokyo, Dec 4, 2013 (invited) | ||
| + | NVIDIA GPU Technology Theater @ SC13, Nov 20, 2013 (invited) | ||
| + | Technical Paper, SC13, Denver, Nov 18, 2013 | ||
| + | NVIDIA GPU Computing Symposium, San Diego, Nov 5-6, 2013 (invited) | ||
| + | CS&E Colloquium Seminar, UCRiveside, Nov 4, 2013 (invited) | ||
| + | Schlumberger HPC Workshop, Houston, Oct 1, 2013 (invited) | ||
| + | XSEDE and Blue Waters Extreme Scaling Workshop, Boulder, Aug 15-16, 2013 | ||
| + | Int’l Workshop of GPU and MIC Solutions to Multiscale Problems in Science and Engineering, Changchun, July 29-Aug 2, 2013 (invited) | ||
| + | ICCS/IHPCES, Barcelona, June 5-7, 2013 (Chair) | ||
| + | Int’l Conference on 3-D Wave Propagation and Imaging Through the Earth’s Interior, June 18-21, Wuhan, 2013 (invited) | ||
| + | Lecture on High Performance Computing, San Diego State, April, 2013 | ||
| + | GTC 2013, San Jose, Mar 18-21, 2013 | ||
| + | ONERA/DSNA, France, Nov 19, 2012 (invited) | ||
| + | HPC China Workshop at SC’12, Nov 13, 2012 (invited) | ||
| + | International Workshop on Co-design, Beijing, Oct 23-25, 2012 (Plenary) | ||
| + | SSA’12, San Diego, Apr 17, 2012 (invited) | ||
| + | US-China Software Workshop, San Diego, March 05, 2012 (invited) | ||
| + | SIAM PP’12, Savannah, Feb 15-17, 2012 (invited) | ||
| + | International Workshop on Co-design, Beijing, Oct 25-26, 2011 (Keynote) | ||
| + | 7th Int’l APEC Cooperation for Earthquake Simulation (APES) Workshop, Otaru, Oct 3-8, 2010 (Plenary) | ||
| + | Int’l Conference of Numerical Analysis and Applied Mathematics (ICNAAM’10), Rhodes, September 19-25, 2010 (invited) | ||
| + | IEEE Int’l Joint Conference on Computational Sciences and Optimization, Huangshan, May 2010 (Keynote) | ||
| + | IBM HPC Scientific Computing User Group Annual Meeting (SciComP), San Francisco, May 2010 (invited) | ||
| + | Int’l Symposium on Grid Computing, Taipei, Mar 2010 (Plenary) | ||
| + | Int’l Symposium for "Integrated Predictive Simulation System for Earthquake and Tsunami Disaster", Tokyo, Japan, 2008 (Keynote) | ||
| + | Western Pacific Geophysics Meeting, AGU Cairns, Australia, July 2008 (Plenary) | ||
| + | NSF Blue Gene Applications Workshop, Cyberinstrastructure Channel, April 2007 (invited) | ||
| + | Second Geoscience Application Requirements for Petascale Architectures (GARPA-2) Workshop, San Diego, February 2007 (invited) | ||
| + | UCSD Physics 244: Parallel Computing Course for Graduate Students, 2007 | ||
| + | Summer Institute Lectures, San Diego Supercomputer Center, 2001 - 2010 | ||
| − | + | =PROFESSIONAL ACTIVITIES= | |
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| − | + | ===Affiliations=== | |
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| − | + | Member, Institute of Electrical & Electronics Engineers (IEEE) | |
| − | + | Member, Association for Computing Machinery (ACM) | |
| − | + | Member, Society for Industrial and Applied Mathematics (SIAM) | |
| + | Member, International Association of Hydrological Sciences (IAHS) | ||
| + | Member, American Geophysical Union (AGU) | ||
| + | Member, Seismological Society of America (SSA) | ||
| − | + | ===Service on National or Steering Committees=== | |
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| − | + | Chair, Computational Science Committee, Southern California Earthquake Center, 2012-2016 | |
| − | + | Planning Committee of Southern California Earthquake Center, 2012-2016 | |
| − | + | IDC Technical Computing Advisory Panel, 2014-date | |
| + | High Performance Computing Advisory Panel, Golden Energy Computing, 2013-date | ||
| + | Technical Program Committee, XSEDE 2011-date | ||
| + | TACC Petascale User Committee, 2006-2013 | ||
| + | Parallel Tools Consortium Steering Committee, 2002-2004 | ||
| + | Liaison of Parallel Tools and Environment with National Partnership for Advanced Computational Infrastructure (NPACI), 2002-2003 | ||
| − | + | ===Service on International Conference Committees=== | |
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| − | + | Co-Chair, Int’l Workshop on Advances in High Performance Computational Applications and Frameworks (IHPCES), 2011-2013, 2016 | |
| − | + | Chair, Int’l Conference on Networking and Distributed Computing (ICNDC), 2016 | |
| − | + | Int’l Conference on Computational Sciences (ICCS), 2007, 2012-date | |
| + | Int’l Meeting on High Performance Computing for Computational Science (VECPAR), 2016 | ||
| + | Co-Chair, VECPAR Scientific Committee, 2014 | ||
| + | International Conference on Parallel Processing (ICPP), 2015 | ||
| + | SIAM Conference on Computational Science & Engineering (CSE), 2015 | ||
| + | Conference on Network and Parallel Computing (NPC), 2015 | ||
| + | Technical Program Committee, SC’13/SC’14 | ||
| + | Int’l Workshop of GPU Solutions to Multiscale Problems in Science and Engineering, 2011 | ||
| + | Int’l Workshop on HPC and Grid Applications (IWHGA’10), 2010 | ||
| + | Int’l Conference on Computational Sciences and Optimization (CSO), 2010/2011 | ||
| + | Science Session Chair, TeraGrid’08 Best Paper Review Committee, 2008 | ||
| − | == | + | ===Review for Journals=== |
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| − | + | Journal of Parallel and Distributed Computing | |
| − | + | Journal of HPC Application | |
| − | + | Journal of Supercomputing | |
| + | Concurrency and Computation | ||
| + | Geophysics | ||
| + | Acta Geotechnica, Springer | ||
| + | Lecture Notes in Computer Science Series, Springer | ||
| + | eBook Synthesis Lectures, Morgan & Claypool Publishers | ||
| − | + | ===Review for Grant and Allocation Proposals=== | |
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| − | + | US National Science Foundation (NSF) Panels | |
| − | + | Southern California Earthquake Center | |
| − | + | Switzerland National Petascale Initiatives and Co-Design Proposals | |
| + | King Abdullah University of Science and Technology | ||
| + | XSEDE XRAC Large Allocation Proposals | ||
| − | + | =SELECTED RESEARCH GRANTS AND ALLOCATIONS= | |
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| − | + | ===Selected Current Grants=== | |
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| − | + | PI, Intel Parallel Computing Center, Accurate and Efficient Earthquake Simulations on Intel Xeon Phi, $140,000, 10/2015 - 9/2016 | |
| − | : | + | NVIDIA Global Impact Award, $150,000, 5/2015 - |
| − | : | + | Co-PI, NSF SI2-SSI: Community Software for Extreme-scale Computing in Earthquake System Science (Phase II), PI: T. Jordan (USC), $475,000, 06/2015 - 5/2018 |
| + | Co-PI, NSF SI2-SSI: A Sustainable Community Software Framework, PI: T. Jordan (USC), $420,000 ($2.5 M total), 08/2012 - 07/2016 | ||
| + | SDSC-PI, W.M. Keck Foundation, Collaboratory for Interseismic Simulation andcModeling (CISM), PI: T. Jordan (USC), $150,000, 07/2015-06/2018 | ||
| + | Co-PI, NSF Geoinformatics: Community Computational Platforms for Developing Three-Dimensional Models of Earth Structure, $140,000, PI: T. Jordan (USC), 5/2014 - 4/2016 | ||
| + | PI, NSF PRAC PAID IME Collaboration on Blue Waters, $75,000, 10/2015-9/2017 | ||
| + | SDSC-PI, NSF FESD Type 1: Fault Earthquake System Dynamics, PI: J. Dieterich (UCR), $500,000 ($4.6 M total), 8/2011 - 8/2017 | ||
| + | Co-PI, NSF Blue Waters Petascale Resource Allocation: Extending the Spatiotemporal Scales of Physics-based Seismic Hazard Analysis, PI: T.H. Jordan (USC), $40,000 Travel award (total), 07/2014 - 06/2016 | ||
| + | Co-PI, The Research Council of Norway R&D: User-friendly Programming of GPU-enhanced Clusters via Automated Code Translation and Optimization, PI: X. Cai (SRL, Norway), $40K Travel award, 07/2012 - 06/2016 | ||
| − | + | ===Selected Past Grants=== | |
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| − | + | Co-PI, NSF SI2-SSI: A Sustainable Community Software Framework, PI: T. Jordan (USC), $420,000 ($2.5 M total), 05/2012 - 04/2015 | |
| − | : | + | Co-PI, NSF SHF: Large: Collaborative Research: Unified Runtime for Supporting Hybrid Programming Models on Heterogeneous Architecture, PI: DK Panda (OSU), $118,498 ($1.8 M total), 05/2012 - 04/2015 |
| − | : | + | Co-PI, NSF Geoinformatics: Community Computational Platforms for Developing Three-Dimensional Models of Earth Structure, $290,000 ($1.8 M total), PI: T. Jordan, (USC), 07/2012 - 06/2014 |
| + | PI, SCEC Core: Accelerating CyberShake SGT Calculations on Heterogeneous Supercomputers, $35,000, 02/2012 - 12/2013 | ||
| + | PI, NSF/NCSA: Phase 1 Enhanced Intellectual Services- Direct PRAC Support- Press-On Blue Waters, $75,000, 05/2012 - 09/2013 | ||
| + | SDSC-PI, NSF Geoinformatics: A Petascale Cyberfacility for Physics-Based Seismic Hazard Analysis (PetaSHA-3), PI: T. Jordan (USC), $250,000 ($1.6 M total), 6/2010 - 12/2012 | ||
| + | NSF PetaApps-2: Outward on the Spiral: Petascale Inference in Earthquake System Science (PetaShake-2), 8/2007 - 07/2011 | ||
| + | NSF PetaApps-1: Collaborative Research: Enabling Earthquake System Science Through Petascale Calculations (PetaShake), 10/2007 - 09/2009 | ||
| + | NSF PRAC: Petascale Research in Earthquake System Science on Blue Waters (PressOnBlueWaters), 10/2009 - 9/2011 | ||
| + | NSF Geoinformatics: Petascale Cyberfacility for Physics-based Seismic Hazard Analysis (PetaSHA-2), 5/2008 - 4/2010 | ||
| − | + | ===High Performance Computing Allocations=== | |
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| − | + | PI, NSF XSEDE Resource Allocation (XRAC): Earthquake and Fault System Dynamics Research, 27.8 M Core-hours, 10/2013-9/2016 | |
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| − | + | Co-PI, NSF XSEDE Resource Allocation (XRAC): PetaSHA: An Earthquake System Science Approach to Physics-based Seismic Hazard Research, 133 M Core-hours in total, 2008-2013 | |
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| − | + | Co-PI, NSF Blue Waters Petascale Resource Allocation (PRAC): Extending the Spatiotemporal Scales of Physics-based Seismic Hazard Analysis, 12.66 M Blue Waters Node-hours, 7/2004-6/2016 | |
| − | ; | + | Co-PI, DOE INCITE: Physics-based Probabilistic Seismic Hazard Analysis / Deterministic Simulation of Large Regional Earthquakes at frequencies Up to 4 Hz, 223 M Processor-Hours on ORNL Jaguar/Titan and ANL Mira/Intrepid, 2009-2013; 433 M Processor-Hours on Titan/Mira, 2015-2016 |
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| − | + | Co-PI, NCAR University ASD: Community Computational Platforms for Developing 3D Models of Earth Structure, 8.5 M Core-Hours on NCAR Yellowstone, 08/2012-11/2012 | |
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| − | + | Co-PI, Early Science Program: Using Multi-scale Dynamic Rupture Models to Improve Ground Motion Estimates, Department of Energy, 150 M ANL Next Generation Blue Gene core-hours, 2011-2013 | |
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| − | + | PI, NSF XRAC Medium Resource Allocation: Parallelization of a Finite Element Code for Petascale Dynamic Modeling, 110 K core-hours, 2010-2011 | |
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| − | + | PI, DOE INCITE: Blue Gene Watson Consortium Days, 2006 and 2007 | |
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| − | + | =COLLABORATORS & OTHER AFFILIATIONS= | |
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| − | + | ===Collaborators=== | |
| − | + | Scott Baden (UCSD), Michael Barall (Invisible), Bill Barth (UT), Greg Beroza (Stanford), Jacobo Bielak (CMU), Xing Cai (SRL, Norway), Scott Callaghan (USC), Po Chen (Wyoming), Zizhong Chen (UCR), Dongju Choi (SDSC), Amit Chourasia (SDSC), Stuart Clark (SRL), Elizabeth Cochran (USGS), Steve Day (SDSU), Mattias Christen (ULugano), Ewa Deelman (USC), Unat Didem (UCSD), James Dieterich (UCR), Eric Dunham (Stanford), Donat Faeh (ETH), Eric Fielding (NASA), Jacqui Gilchrist (UCSC), Clark Guest (UCSD), Alexander Heinecke (Intel), Wen-Mei Hwu (UIUC), Thomas H. Jordan (USC), Gideon Juve (USC), Jeff Larkin (NVIDIA), Masha Liukis (USC), Amit Majumdar (SDSC), Philip Maechling (USC), Kevin Milner (USC), David Oglesby (UCR), Kim Olsen (SDSU), Dhabaleswar K. (DK) Panda (Ohio State), Dmitry Pekurovsky (SDSC), Efecan Poyraz (Google), Keith Richards-Dinger (UCR), Daniel Roten (SDSU), William Sarvan (SDSU), Tim Scheitlin (NCAR), Olaf Schenk (ULugano), Karl Schulz (Intel), Zheqiang Shi (SDSU), Liwen Shih (UHouston), Bruce Shaw (Columbia), John Shaw (Harvard), Jonathan Stewart (UCLA), Ricardo Taborda (UMemphis), Mahidhar Tatineni (SDSC), Karen Tomko (Ohio State), Jeroen Tromp (Princeton), Terry Tullis (Brown), Karan Vahi (USC), Ray E. Wells (USGS), Kyle Withers (SDSU), Heming Xu (Fico), Farzin Zareian (UCI), Jun Zhou (Baidu) | |
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| − | + | ===Thesis Advisor and Postgraduate Scholar Sponsor (Last five years):=== | |
| − | : | + | Harsha Basavaraj (2016, M.S.), Alexander Breuer (Postdoc, 2015-), Kunyao Chen (2014-2015, M.S.), Aravind Kimar K (2016, M.S.), Shashank Kaushik (2014-2015, M.S), Brajesh Kushwaha (2014, M.S.), Kwangyoon Lee (2009-2011, Ph.D.), Dawei Mu (postdoc, 2016-), Siyuan Mu (2014, M.S.), Hieu Nyugen (2009-2011, Ph.D.), Efecan Poyraz (2012-2014, Ph.D.), Sridhar S (2014, M.S.), Shiyu Song (2011-2012, Ph.D.), Josh Tonin (2016, Ph.D.), Gautam Wilkins (2016, Ph.D.), Jiyang Yu (2014-, Ph.D.), Boyan Zhang (2013-2014, M.S.), Jun Zhou (Thesis Advisor, 2012-2014, Ph.D), |
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| − | + | =RECENT PUBLICATIONS AND ABSTRACTS= | |
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| − | + | ===Book or Book Chapters=== | |
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| − | + | 1. Cui, Y., Chourasia, A., Moore, R., Olsen, K., Maechling, P., Jordan, T., The TeraShake Computational Platform for Large-scale Earthquake Simulations, Advances in Geocomputing, Lecture Notes in Earth Sciences 119, DOI 10.1007/978-3-540-85879-9_7, 229-278, editor H. Xing, Springer-Verlag Berlin Heidelberg, 2009. | |
| − | + | 2. Maechling, P., Deelman, E., Zhao, L., Graves, R., Mehta, G., Gupta, R., Mehringer, J., Kesselman, C., Callaghan, S., Okaya, D., Francoeur, H., Gupta, V., Cui, Y., Vahi, K., Jordan, T. and Field, E. “SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations”, in Workflows for e-Science, Ian Taylor et al. eds, 144-163, Springer, 2007 | |
| − | + | 3. Kanamitsu, M., Kanamaru, H., Cui, Y., Juang, H., Parallel Implementation of Regional Spectral Atmospheric Model, Public Interest Energy Research Program (PIER) Project, California Energy Commission, 1-17, CEC-500-2005-014, Feb, 2005. | |
| + | 4. Cui, Y., Different Approaches towards an Understanding of Runoff Generation. Freiburger Schriften zur Hydrologie, Band 7 (ISSN 0945-1609), pp. 163, 1998. | ||
| − | + | ===Journal Papers=== | |
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| − | + | 1. Roten, D., Olsen, K.B., Day, S.M., Cui, Y. and Fäh, D., Expected seismic shaking in Los Angeles reduced by San Andreas fault zone plasticity, Geophysical Research Letters, 41, No. 8, 2769-2777, doi:10.1002/2014GL059411, April, 2014. | |
| − | : | + | 2. Xu, H., Cui, Y., Dieterich, J., Richards-Dinger, K., Poyraz, E. and Choi, D., Aftershock sequence simulations using synthetic earthquakes and rate-state seismicity formulation, Earthquake Science, Special Issue, 27(4), 401-410, Springer. DOI 10.1007/s11589-014-0087-7. |
| − | : | + | 3. Unat, D., Zhou, J., Cui, Y., Cai, X. and Baden, S.: Accelerating an Earthquake Simulation with a C-to-CUDA Translator, Journal of Computing in Science and Engineering, Vol. 14, No. 3, 48-58, May/June, CiSESI-2011-09-0094, May, 2012. |
| + | 4. Olsen, K. B., Dalguer, L., Day, S., Cui, Y., Zhu, J., Cruz, V.M., Roten, D., Mayhew, J., Maechling, P., Jordan, T., Chourasia, A. and Okaya, D. ShakeOut-D: Ground Motion Estimates Using an Ensemble of Large Earthquakes on the Southern San Andreas Fault With Spontaneous Rupture Propagation, Geophysical Research Letters, 36, L04303, 1-6, doi:10.1029/ 2008GL036832, 2009. | ||
| + | 5. Bielak, J., Graves, R., Olsen, K., Taborda, R., Ramirez-Guzman, L., Day, S., Ely, G., Roten, D., Jordan, T., Maechling, P., Urbanic, J., Cui, Y. and Juve, G.: The ShakeOut Earthquake Scenario: Verification of Three Simulation Sets. Geophysical Journal International, Vol. 80, 375-404, 10.1111/j.1365-246X.2009. 04417.x, October, 2009. | ||
| + | 6. Cui, Y., Moore, R., Olsen, K., Chourasia, A., Maechling, P., Minster, B., Day, S., Hu, Y., Zhu J., Jordan, T., Towards Petascale Earthquake Simulations, Acta Geotechnica, 4 (2), 79-93, DOI 10.1007/S11440-008-0055-2, Springer, 2008. | ||
| + | 7. Olsen, K. B., S. M. Day, J. B. Minster, Y. Cui, A. Chourasia,, D. Okaya, P. Maechling, and T. Jordan. TeraShake2: Spontaneous Rupture Simulations of Mw7.7 Earthquakes on the Southern San Andreas Fault Bull Seis. Soc. Am., 98 (3), 1162-1185, June, 2008. | ||
| + | 8. Cui, Y., Moore, R., Olsen, K., Chourasia, A., Maechling, P., Minster, B., Day, S., Hu, Y., Zhu J., Majumdar, A., Jordan, T., Enabling Very-Large Scale Earthquake Simulations on Parallel Machines, Advancing Science and Society through Computation”, International Conference on Computational Science 2007, PART I, Lecture Notes in Computer Science Series 4487, 46-53, Springer, 2007. | ||
| + | 9. Chourasia. A. Cutchin, S. M., Olsen. K.B., Minster. B., Day. S., Cui. Y., Maechling. P., Moore. R., Jordan. T., Insights gained through visualization for large earthquake simulations, Discovering the Unexpected, Computer Graphics and Application Journal, Vol. 27, No. 6, 28-34, September/October, 2007. | ||
| + | 10. Faerman, M, Moore, R., Cui, Y., Hu, Y., Zhu, J., Minister, B., and Maechling, P., Large Scale Data for Earthquake Simulations, Journal of Grid Computing, 1-12, DOI 10.1007/s10723-007-9072-x, Springer-Verlag, 2007. | ||
| + | 11. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Maechling, P. and Jordan, T., Strong Shaking in Los Angeles Expected From Southern San Andreas Earthquake, Geophysical Research Letters, 33(7), 1-4, 2006. | ||
| − | + | ===Conferences Proceedings=== | |
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| − | + | 1. Roten, D., K. B. Olsen, Y. Cui, and S. M. Day, Quantification of fault zone plasticity effects with spontaneous rupture simulations, Workshop on Best Practice in Physics-Based Fault Rupture Models for Seismic Hazard Assessment of Nuclear Installations, Vienna, Austria, Nov 18-20, 2015. | |
| − | : | + | 2. Poyraz, E., Xu, H. and Cui, Y., Application-specific I/O Optimizations on Petascale Supercomputers, Proceedings of International Conference on Computational Science, Vol 29, 910-923, Elsevier, Cairns, June 10-12, 2014. |
| − | : | + | 3. Cui, Y., Poyraz, E., Olsen, K., Zhou, J., Withers, K., Callaghan, S., Larkin, J., Guest, C., Choi, D., Chourasia, A., Shi, Z., Day, S., Maechling, P. and Jordan, T., Physics-based Seismic Hazard Analysis on Petascale Heterogeneous Supercomputers, Technical Paper, SC13, Denver, Nov 17-22, 2013 (in press) |
| + | 4. Chourasia, A., Cui, Y., Poyraz, E., Olsen, K., Zhou, J., Withers, K., Callaghan, S., Larkin, J., Guest, C., Choi, D., A., Shi, Z., Day, S., Maechling, P. and Jordan, Visualization Of Deterministic High-Frequency Ground Motions From Simulations Of Dynamic Rupture Along Rough Faults With And Without Medium Heterogeneity Using Petascale Heterogeneous Supercomputers, SC’2013 Visualization Showcase, Denver, Nov 17-22, 2013. | ||
| + | 5. Scheitlin, T., Domingo, P., Olsen, K., Sarvan, W., Cui, Y., Poyraz, E., Maechling, P. and Jordan, T., Simulated Wave Propagation for the Mw5.4 Chino Hills, CA, Earthquake, Including a Statistical Model of Small‐Scale Heterogeneities, SC2013 Visualization Showcase, Denver, Nov 17-22, 2013. | ||
| + | 6. Callaghan, S., Maechling, P., Vahi, K., Juve, G., Deelman, E., Cui, Y., Poyraz, E., Jordan, T., Running A Seismic Workflow Application on Distributed Resources, Poster, SC13, Denver, Nov 17-22, 2013 | ||
| + | 7. Cui, Y., Poyraz, E., Zhou, J., Callaghan, S., Maechling, P., Jordan, T., Shih, L. and Chen, P., Accelerating CyberShake Calculations on XE6/XK7 Platforms of Blue Waters, Proceeding of Extreme Scaling Workshop 2013, August 15-16, Boulder, 2013, IEEE Xplore Digital Library. | ||
| + | 8. Xu, H., Y. Cui, DJ Choi, E. Poyraz, K. Ricards-Dinger, J.H. Dieterich, Large-scale Earthquake Rupture Simulations Using a Hybrid Method, XSEDE’13, Poster, San Diego, July 22-25, 2013. | ||
| + | 9. Zhou, J., Y. Cui, E. Poyraz, D. Choi, and C. Guest, Multi-GPU implementation of a 3D finite difference time domain earthquake code on heterogeneous supercomputers, Proceedings of International Conference on Computational Science, Vol. 18, 1255-1264, Elsevier, ICCS 2013, Barcelona, June 5-7, 2013. | ||
| + | 10. Cui, Y., Petascale simulations of strong motion and tomographic seismology using AWP-ODC, Int’l Conference on 3-D Wave Propagation and Imaging Through the Earth’s Interior, June 18-21, Wuhan, 2013. | ||
| + | 11. Christen, M., O. Schenk, and Y. Cui, PATUS for Convenient High-Performance Stencils: Evaluation in Earthquake Simulations, Technical Paper, SC12, Salt Lake City, Nov 10-16, 2012. | ||
| + | 12. Chourasia, A., Zhou, J., Cui, Y., Choi, DJ, Olsen, K.: Role of visualization in porting a seismic simulation from CPU to GPU architecture (Visualization Showcase), XSEDE’12, Chicago, July 16-20, 2012. | ||
| + | 13. Zhou, J., Choi, DJ, Cui, Y.: GPU acceleration of a 3D finite difference earthquake code on XSEDE Keeneland, XSEDE’12, Chicago, July 16-20, 2012. | ||
| + | 14. Zhou, J., Didem, U., Choi, D., Guest, C. & Y. Cui, Hands-on Performance Tuning of 3D Finite Difference Earthquake Simulation on GPU Fermi Chipset, Proceedings of International Conference on Computational Science, Vol. 9, 976-985, Elesvier, ICCS 2012, Omaha, Nebraska, June, 2012. | ||
| + | 15. Cui, Y., Olsen, K., Jordan, T., Lee, K., Zhou, J., Small, P., Ely, G., Roten, D., Panda, DK, Chourasia, A., Levesque, J., Day, S. and Maechling, P., Scalable Earthquake Simulation on Petascale Supercomputers, Gordon Bell Finalist, Supercomputing’10, 1-20, New Orleans, Nov, 2010. | ||
| + | 16. Cui, Y., Looking forward to Architecture Changes with Seismic Wave Propagation Using a 3D Finite Difference Code, Int'l Conference of Numerical Analysis and Applied Mathematics, pp. 1781, edited by T. E. Simos, G. Psihoyios, and Ch. Tsitouras, Rhodes, Greece, 19-25 September 2010. | ||
| + | 17. Zhou, J., Cui, Y., Davis, S., Guest, C., Maechling, P., Workflow-Based High Performance Data Transfer and Ingestion to Support Petascale Simulations, IEEE Comput. Sciences and Optimization (CSO’10), vol. 1, 343-347, May 2010. | ||
| + | 18. Potluri, S., Lai, P., Tomko, K., Cui, Y., Tatineni, M., Barth, W., Majumdar, A. and Panda, DK: , “Quantifying performance benefits of overlap using MPI-2 in a seismic modeling application”, Proceedings of the 24th ACM Int’l Conference on Supercomputing, 17-25, doi: 10.1145/1810085.1810092, 2010. | ||
| + | 19. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.-B., Graves, R.W., Bielak, J., Taborda , R., Beroza , G., Ma, S., Cui , Y., Urbanic , J., and Callaghan , S., The Big Ten Earthquake Scenarios for Southern California, SRL, 81(2), pp. 311, 2010. | ||
| + | 20. Lee, K., Cui, Y., Maechling, P., Olsen, K. and Jordan, T., Communication Optimizations of SCEC CME AWP-Olsen Application for Petascale Computing (Best Poster Finalist), Supercomputing 09, Portland, 2009. | ||
| + | 21. Lee, K., Cui, Y., Kaiser, T., Maechling, P., Olsen, K. and Jordan, T., IO Optimizations of SCEC CME AWP-Olsen Application for Petascale Earthquake Computing (Best Poster Finalist), Supercomputing 09, Portland, 2009. | ||
| + | 22. Maechling, P., Deelman, E., Cui, Y., Implementing Software Acceptance Tests as Scientific Workflows, International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’09), Las Vegas, July 13-16, 2009. | ||
| + | 23. Maechling, P., Muench, H., Francoeur, H., Okaya, D., Cui, Y.: SCEC Earthworks Science Gateway: Interactive Configuration and Automated Execution of Earthquake Simulations on the TeraGrid. BroadeningParticipation in TeraGrid, TeraGrid’07 Conference, Madison, June 4-8, 2007. | ||
| + | 24. Muench, J., Maechling, P., Francoeur, H., Okaya, D., Cui, Y., 2006: SCEC/CME Earthworks Science Gateway: Widening SCEC Community Access to the TeraGrid. Advancing Scientific Discovery, TeraGrid’06 Conference, Indianapolis, June, 2006. | ||
| + | 25. Cui, B., Moore, R., Olsen, K., Chourasia, A., Y. Hu, J. Zhu, Minster, B., Maechling, P., Enabling a Large-scale Application on the TeraGrid, Advancing Scientific Discovery, TeraGrid’06 Conference, Indianapolis, June, 2006. | ||
| + | 26. Cui, Y., Juang, H.-M. H., Chukkapalli, G. and Kanamitsu, M., Development and Performance of a Massively Parallel Regional Spectral Model, Proceeding of the High Performance Computing & Simulation Conference, 83-89, ISBN 3-936150-35-4 (book), June 13-16, Magdeburg, Germany, 2004. | ||
| + | 27. Olsen, K.B., Minster, J.-B., Moore, R., Day, S., Maechling, P., Jordan, T., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majumdar, A., Chukkapalli, G., Xin, Q., Moore, R., Banister, B., Thorp, D., Kovatch, P., Diegel, L., Sherwin, T., Jordan, C., Thiebaux, M., Lopez, J., SCEC TeraShake - Supporting an Earthquake Storage Intensive Simulation, Proceedings of the SC2004 High Performance Computing, Networking and Storage Conference, November, 2004. | ||
| − | + | ===Conferences Abstracts=== | |
| − | |||
| − | |||
| − | + | 1. Cui, Y., Acceleration of Physics-based Seismic Hazard Analysis on Hybrid Many-core Architectures, SPNS’2013, Tokyo, Dec 6, 2013. | |
| − | : | + | 2. Cui, Y., A. Chourasia and B. Minster, The Past, Present and Future of Big Data for Extreme-scale Earthquake Simulation, Big Data Workshop, UCSD, Nov 15, 2013. |
| − | : | + | 3. Cui, Y, E. Poyraz, J. Zhou, S. Callaghan, P.J. Maechling, T.H. Jordan, L. Shih and P. Chen, Accelerating CyberShake Calculations on Petascale Heterogeneous Supercomputers, 2013 SCEC Annual Meeting, September 8-11, 2013. |
| + | 4. Cui, Y., Physics-based Seismic Hazard Analysis on Petascale Supercomputers, Int’l Workshop of GPU and MIC Solutions to Multiscale Problems in Science and Engineering (GPU-SMP), Changchun, July 29-August 2, 2013. | ||
| + | 5. Cui, Y., J. Zhou, E. Poyraz, DJ Choi, P.J. Maechling and T.H. Jordan, Accelerating Seismic Wave Propagation Simulations for Future Eartthquake Sciece, Blue Waters Symposium, Urbana, May 21-22, 2013. | ||
| + | 6. Cui, Y., Accelerating Seismic Wave Propagation Simulation on Petascale Heterogeneous Architectures. GTC’13, San Jose, March 24-27, 2013. | ||
| + | 7. Cui, Y., Zhou, J. and Choi, D., A 77-Fold Speedup and 100 Tflops Acceleration of Seismic Wave Propagation AWP-ODC on heterogeneous supercomputers, Eos Trans, AGU 93(40), Fall Meet. Suppl., Abstract IN33A-1531, Dec, 2012. | ||
| + | 8. Poyraz, E., Zhou, J., Choi, DJ, Chourasia, A. and Cui, Y.: A 77-fold speedup and 100 Tflops acceleration of seismic wave propagation AWP-ODC on Heterogeneous Supercomputers, 2012 SCEC Annual Meeting, September 9-12, Palm Springs, 2012. | ||
| + | 9. Cui, Y., Olsen, K.B., Zhou, J., Small, P., Chourasia, A., Choi, D., Day, S., Maechling, P. & Jordan, T., Development and Optimizations of a SCEC Community Anelastic Wave Propagation Platform for Multicore Systems and GPU-based Accelerators, SRL, vol. 83, no. 2, pp. 396, SSA’2012, San Diego, April 17-19, 2012 | ||
| + | 10. Cui, Y., Olsen, K., Jordan, T., Day, S., Panda, DK, Chourasia, A., Levesque, J. and Maechling, P., Petascale Simulation of Regional Seismic Wave Propagation Using AWP-ODC, SIAM PP’12, Savannah, Feb 15-17, 2012. | ||
| + | 11. Zhou, J., S. Callaghan, S. Song, P. Chen, K. Olsen, R. Graves, P. Small, P. Maechling, Y. Cui, and T. Jordan. “AWP-ODC-SGT: Wave Propagation and Dynamic Rupture Simulation Software with Strain Green’s Tensor (SGT) for CyberShake 2.0”, 2011 SCEC Annual Meeting, Palm Spring, September 11-14, 2011. | ||
| + | 12. Zhou, J., Choi, D. and Cui, Y. “Acceleration of 3D Finite Difference AWP-ODC for Seismic Simulation on GPU Fermi Architecture”, 2011 SCEC Annual Meeting, Palm Spring, September 11-14, 2011. | ||
| + | 13. Jordan, T.H., Cui, Y., Olsen, K.B., Graves, R.W., Maechling, P.J., Day, S.M., Callaghan, S., Milner, K. “ From M8 to CyberShake: Using Large-Scale Numerical Simulations to Forecast Earthquake Ground Motions (invited). Eos Trans, AGU 91(55), Fall Meet. Suppl., Abstract, U13B-04, San Francisco, 13-17 Dec. 2010. | ||
| + | 14. Maechling, P J, Kumar, S., Krishnan, Cui, Y., Olsen, K.B., Chourasia, A., Ely, G.P., Jordan, T.H. “SCEC VShaker Project: Visualization of Steel Building Response to Ground Mortion Time Histories”, Eos Trans, AGU 91(55), Fall Meet. Suppl., Abstract, S41A-2009, San Francisco, 13-17 Dec. 2010. | ||
| + | 15. Olsen, K.B., Day, S.M., Dalguer, L.A., Cui, Y., Maechling, P., Jordan, T.H., Chourasia, A., Okaya, D. “ Intra-event Uncertainty of Long-Period Ground Motions for Large Earthquakes with Southeast-Northwest Rupture Directions on the Southern San Andreas Fault,” SRL, vol. 81, no. 2, pp. 329, SSA 2010 Annual Meeting, Portland, OR, April 21-23, 2010. | ||
| + | 16. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R.W., Bielack, J., Taborda, R., Beroza, G., Cui, Y., Urbanic, J., Callaghan, S. “The Big Ten Earthquake Scenarios for Southern California,” SRL, vol. 81, no. 2, pp. 311, SSA 2010 Annual Meeting, Portland, OR, April 21-23, 2010. | ||
| + | 17. Lee, K., Cui, Y., Maechling, P., Olsen, K.B., Jordan, T.H. “ Communication Optimizations of SCEC PetaShake Application,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 18. Lee, K., Cui, Y., Kaiser, T.H., Maechling, P., Olsen, K.B., Jordan, T.H. “Parallel IO Optimizations for SCEC ShakeOut-D Simulations,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 19. Maechling, P., Jordan, T.H., Beroza, G.C., Bielak, J., Chen, P., Cui, Y., Day, S., Deelman, E., Graves, R., Minster, J.B., Olsen, K.B., CME Collaboration. “SCEC PetaSHA-2 and PetaShake-2 Projects: Large scale Numerical Modeling in Support of SCEC Earthquake System Science,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 20. Nguyen, H.T., Cui, Y., Olsen, K.B., Lee, K. “ Single CPU Optimizations of SCEC AWP-Olsen Application,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 21. Zhou, J., Cui, Y., Lee, K. “Automatic End-to-End Workflow to Support SCEC Capability Simulations on Teragrid,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 22. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R., Bielak, J., Taborda, R., Beroza, G., Ma, S., Cui, Y., Urbanic, J., Callaghan, S. “ The Big Ten Earthquake Scenarios For Southern California,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. | ||
| + | 23. Ely, G., Jordan, T,H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R.W., Ma, S., Beroza, G.C, Bielak, J., Taborda, R., Cui, Y., Urbanic, J., Callaghan, S., “ The Big Ten earthquake scenarios for Southern California,” Eos Trans. AGU, 90(47), Fall Meet. Suppl., Abstract S34A-03, 2009. | ||
| + | 24. Bielak, J., Graves, R.W., Olsen, K., Taborda, R., Ramirez-Guzman, L., Day, S., Ely, G., Roten, D., Jordan, T., Maechling, P., Urbanic, J., Cui, Y., Juve, G. “ShakeOut simulations - verification,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, S33A-1921, 2008. | ||
| + | 25. Cui, Y., Kaiser, T., Zhu, J., Lee, K., Maechling, P., Olsen, K.B., Jordan, T.H. “SCEC CME AWP-Olsen Application Enhancements for Petascale Computing,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. | ||
| + | 26. Cui, Y., Zhu, J., Chourasia, A., Olsen, K.B., Dalguer, L.A., Lee, K., Davis, S., Day, S., Juve, G., Maechling, P., Jordan, T.H. “ Supporting SCEC PetaShake Simulations,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. | ||
| + | 27. Dalguer, L.A., Day, S.M., Olsen, K.B., Cruz-Atienza, V.M., Cui, Y., Zhu, J., Gritz, A., Okaya, D., Maechling, P. “Implications of the ShakeOut Source Description for Rupture Complexity and Near-Source Ground Motion,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. | ||
| + | 28. Maechling, P., Jordan, T.H., Archuleta, R., Beroza, G., Bielak, J., Chen, P., Cui, Y., Day, S.M., Deelman, E., Graves, R., Minster, J.B., Olsen, K.B. “SCEC Research Using High Performance Computing by the SCEC/CME Collaboration,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. | ||
| + | 29. Olsen, K.B., Day, S.M., Dalguer, L.A., Cui, Y., Zhu, J., Mayhew, J., Maechling, P., Jordan, T.H., Chourasia, A., Okaya, D. “ShakeOut-D: Ground Motion Estimates using an Ensemble of Large Earthquakes on the Southern San Andreas Fault with Spontaneous Rupture Propagation,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. | ||
| + | 30. Olsen, K., Day, S., Cui, Y., Zhu, J., Chourasia, A., Moore, R., Maechling, P., Jordan, T. “SCEC ShakeOut2 Simulations of Large Earthquakes on the Southern San Andreas,”
SEG 2008 Annual Meeting, Las Vegas, NV, Nov 9-14, 2008. | ||
| + | 31. Olsen, K., Day, S., Dalguer, L., Mayhew, J., Roten, D., Cui, Y., Zhu, J., Cruz-Atienza, V., Maechling, P., Jordan, T., Okaya, D., Chourasia, A. “ShakeOut-D: Ground Motion Estimates Using an Ensemble of Large Earthquake on the southern San Andreas Fault with Spontaneous Rupture Propagation,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, S51D-1796, 2008. | ||
| + | 32. Maechling, P., Jordan, T., Archuleta, R., Beroza, G., Bielak, J., Chen, P., Cui, Y., Day, S., Deelman, E., Graves, R.W., Minster, J.B., Olsen, K. “SCEC Earthquake System Science Using High Performance Computing,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, IN51A--1141, 2008. | ||
| + | 33. Cui, Y., Zhu, J., Olsen, K.B., Chourasia, A., Moore, R., Dalguer, L.A., Day, S.M., Cruz-Atienza, V., Maechling, P., Jordan, T.H. “ PetaSHA Simulations Optimization,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. | ||
| + | 34. Cui, Y., Moore, R., Olsen, K., Zhu, J., Dalguar, L., Day, S., Cruz-Atienza, V., Maechling, P., Jordan, T. “Mapping PetaSHA applications to TeraGrid Architectures,” Eos Trans, AGU 88(52), Fall Meet. Suppl., Abstract, IN21B-0483, 2007. | ||
| + | 35. Dalguer, L.A., Day, S.M., Olsen, K.B., Cruz-Atienza, V., Cui, Y., Zhu, J., Rojas, O., Gritz, A., Okaya, D., Maechling, P. “DynaShake platform and dynamic source models for the southern San Andreas Fault ShakeOut,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. | ||
| + | 36. Olsen, K.B., Day, S.M., Cui, Y., Zhu, J., Juve, G., Maechling, P. “ShakeOut: 1 Hz ground motion simulations for the southern San Andreas fault,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. | ||
| + | 37. Maechling, P.J., Jordan, T.H., Okaya, D., Olsen, K.B., Cui, Y., Moore, R., Muench, J. “Developing a Community Earthquake Wave Propagation Code for Seismology: The TeraShake Example,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, Kona, HI, April 11-13, 2007. | ||
| + | 38. Callaghan, S., Graves, R., Zhao, L., Gupta, N., Mehta, G., Okaya, D., Deelman, E., Field, E., Cui, Y., Mehringer, J., Kesselman, C., Maechling, P., Jordan, T.H. “SCEC CyberShake Platform: Probabilistic Seismic Hazard Analysis Using 3D Seismic Wave Form Modeling,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 39. Cui, Y., Olsen, K.B., Day, S.M., Chourasia, A., Hu, Y., Zhu, J., Kremenek, G., Moore, R., Minster, J.B., Maechling, P., Jordan, T.H. “Optimization and Execution of Large-Scale Terashake 2 Earthquake Simulations”, Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 40. Cui, Y., Olsen, K , Hu, Y , Day, S , Dalguer, L , Minster, J, Moore, R , Zhu, J , Maechling, P, Jordan, T. “Optimization and Scalability of an Large-Scale Earthquake Simulation Application,” Eos Trans, AGU 87(52), Fall Meet. Suppl., Abstract, S41C-1351, 2006. | ||
| + | 41. Dalguer, L.A., Day, S.M., Olsen, K.B., Cui, Y. “Implementation of the Staggered-Grid Split-Node Method in a MPI Finite Difference Code for large scale models of Spontaneous Dynamic Rupture Simulation,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 42. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Moore, R., Hu, Y., Zhu, J., Maechling, P. “SCEC TeraShake Simulations: High Resolution Simulation of Large Southern San Andreas Earthquakes Using the TeraGrid,” Advancing Scientific Discovery, TeraGrid’06 Conference. Indianapolis, June, 2006. | ||
| + | 43. Graves, R., Maecchling, P., Zhao, L., Mehta, G., Gupta, N., Mehringer, J., Deelman, E., Kesselman, C., Callagham, S., Cui, Y., Field, E., Gupta, V., Jordan, T., Okaya, D., Vahi, K. “SCEC CyberShake Platform: Incorporating Deterministic 3D Waveform Modeling into Probabilistic Seismic Hazard Curves,” Seismological Society of Amercia Annual Meeting, Abstract Z8, 2006. | ||
| + | 44. Gupta, N., Callaghan, S., Graves, R., Mehta, G., Zhao, L., Deelman, E., Jordan, T.H., Kesselman, C., Okaya, D., Cui, Y., Field, E., Gupta, V., Vahi, K., Maechling, P.J. “Calculating the Probability of Strong Ground Motions Using 3D Seismic Waveform Modeling - SCEC CyberShake,” Eos Trans. AGU 87(52), Fall Meet. Suppl., Abstract, IN53B-0824, 2006. | ||
| + | 45. Hu, Y., Zhu, J., Cui, Y., Kremenek, G., Moore, R. “SRB Digital Library Data Management for SCEC,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 46. Maechling, P., Jordan, T., Bernard Minster, J., Olsen, K., Day, S., Archuleta, R., Bielak, J., O’Hallaron, D., Okaya, D., Field, E., Francoeur, H., Muench, J., Callaghan, S., Gupta, N., Gupta, V., Cui, Y. (2006), “Using the SCEC Computational Platforms for Seismic Hazard Analysis Research,” Geoinformatics 2006, USGS Reston VA, May 2006 | ||
| + | 47. Deelman, E., Maechling, P., Graves, R., Zhao, L., Mehta, G., Gupta, N., Kesselman, C., Callaghan, S., Cui, Y., Field, E., Gupta, V., Jordan, T., Okaya, D., Gullapalli, S., Vahi, K. “SCEC Earthquake System Science Research Using the Power of the Grid (2006),” GlobusWorld 2006, Washington D.C., Sept 14, 2006 | ||
| + | 48. Francoeur, H., Muench, J., Okaya, D., Cui, Y., Maechling, P., Deelman, E., Mehta, G., Jordan, T. “SCEC Earthworks: Community Access to Wave Propagation Simulations,” Geoinformatics, 2006 Conference, Abstract, 2006. | ||
| + | 49. Graves, R., Maechling, P., Zhao, L., Mehta, G., Gupta, N., Mehringer, J., Deelman, E., Kesselman, C., Callaghan, S., Cui, Y., Field, E., Gupta, V., Jordan, T.H., Okaya, D., Vahi, K. “SCEC CyberShake Platform: Incorporating Deterministic 3D Waveform Modeling into Probabilistic Seismic Hazard Curves,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, San Francisco, CA, April 18-22, 2006. | ||
| + | 50. Olsen, K.B., Say, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Hu, Y., Zhu, J., Li, Y., Maechling, P., Jordan, T.H. “TeraShake: Strong Shaking in Los Angeles Expected from Southern San Andreas Earthquake,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, San Francisco, CA, April 18-22, 2006. | ||
| + | 51. Okaya, D., Francoeur, H., Muench, J., Cui, Y., Maechling, P., Deelman, E., Mehta, G., Jordan, T.H. “SCEC Earthworks Science Gateway: Widening SCEC Community Access to the Teragrid”, Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 52. Zhu, J., Hu, Y., Cui, Y., Kremenek, G., Moore, R., Maechling, P. “Digital Library for Terashake Earthquake Simulations,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. | ||
| + | 53. Cui, Y., Chukkapalli, G., Brieger, L., Majumdar, A. “SDSC’s Strategic Applications Collaborations Program Helps SCEC Researchers with Terascale Earthquake Simulation,” SCEC 2005 Annual Meeting, Palm Springs, CA, Sep.11-14, 2005. | ||
| + | 54. Maechling, P., Callaghan, S., Cui, Y., Faerman, M., Field, E., Graves, R., Gupta, N., Gupta, V., Jordan, T.H., Kesselman, C., Mehringer, J., Mehta, G., Okaya, D., Vahi, K., Zhao, L. “SCEC/CME CyberShake: Calculating Probabilistic Seismic Hazard Curves Using 3D Seismic Waveform Modeling,” SCEC 2005 Annual Meeting, Palm Springs, CA, Sep.11-14, 2005. | ||
| + | 55. Minster, J., Olsen, K., Day, S., Cui, Y., Faerman, M., Moore, R., Okaya, D., Jordan, T., Archuleta, R., Hu, Y., Ely, G. “TeraShake-2: Next Steps,” Eos Trans. AGU, 86(52), Fall Meet. Suppl., IN21D-08, INVITED, 2005. | ||
| + | 56. Callaghan, S., Maechling, P., Cui, Y., Faerman, M., Field, E., Graves, R., Gupta, N., Gupta, V., Jordan, T.H., Kesselman, C., Mehta, G., Okaya, D., Vahi, K., Zhao, L. “SCEC/CME CyberShake: Probabilistic Seismic Hazard Analysis Using 3D, Seismic Waveform Modeling,” Eos Trans. AGU 86(52), Fall Meet. Suppl., Abstract, IN23B-1212, 2005. | ||
| + | 57. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Hu,Y., Zhu, J., Li, Y., Maechling, P., Jordan, T. “TeraShake: Strong Shaking in Los Angeles Expected From Southern San Andreas Earthquake,” Eos Trans, AGU 86(52), Fall Meet. Suppl., Abstract, S52A-03, 2005. | ||
| + | 58. Olsen, K.B., Day, S.M., Minister, J.B., Cui, Y., Chourasia, A., Hu, Y., Li, Y., Zhu, J., Faerman, M., Moore, R., Maechling, P., Jordan, T.H. “Terashake: Large-Scale Simulations of Earthquakes on the Southern San Andreas Fault”, 2005 SCEC Annual Meeting, Palm Springs, CA, Sep. 11-14, 2005. | ||
| + | 59. Minster, J., Olsen, K B., Moore, R., Day, S., Maechling, P., Jordan, T., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majundar, A., Chukkapalli, G., Xin, Q., Banister, B., Thorp, D., Kovatch, P., Diegel, L., Sherwin, T., Jordan, C., Thiebaux, M., Lopez, J. “The SCEC TeraShake Earthquake Simulation,” Eos Trans. AGU, 85(47), Fall Meet. Suppl., Abstract SF31B-05 INVITED, 2004. | ||
| + | 60. Olsen, K.B., Minster, J.B., Moore, R., Day, S.M. Day, Maechling, P., Jordan, T.H., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majumdar, A., Chukkapalli, G., Xin, Q., Moore., R., Banister, B., Thorm, D., Kovatch, P., Diegel, L., Sherwin, T., Thiebaux, M., Lopez, J. “SCEC TeraShake- Supporting an Earthquake Storage Intensive Simulation,” SCEC 2004 Annual Meeting, Palm Springs, CA, Sep.19-22, 2004. | ||
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Revision as of 13:59, 3 May 2016
- Address:
- University of California, San Diego
- San Diego Supercomputer Center
- 9500 Gilman Drive MC 0505
- Office:
- 415
- Email:
- yfcui@sdsc.edu
- Phone:
- +1 (858) 822-0916
APPOINTMENTS
Director, High Performance GeoComputing Laboratory, San Diego Supercomputer Center, 2010 - present Adjunct Professor, San Diego State University, July, 2009 - present Senior Computational Scientist, San Diego Supercomputer Center, 2001-present Postdoctoral Researcher, Scripps Institution of Oceanography, 2000-2001 Staff Climatologist/Senior Scientific Programmer, Atmospheric Environmental Branch, Environment Canada, Vancouver, 1997-2000 Research Assistant, Institute of Hydrology, University of Freiburg, Germany, 1993-1996 Research Engineer, Nanjing Research Institute of Hydrology and Water Resources, Nanjing, China, 1987-1991 Assistant Engineer, Kunming Hydroelectric Design and Research Institute, Kunming, 1982-1984
EDUCATION
Ph.D. in Hydrology, University of Freiburg, Germany, 1997 M.Sc. in Water Resources and Hydroclimatology, Hohai University, China, 1987 B.Sc. in Meteorology, Nanjing Institute of Meteorology, China, 1982
AWARDS & HONORS
Director of Intel Parallel Computing Center, Oct, 2015 NVIDIA Global Impact Award, March, 2015 IDC HPC Innovation Excellence Award, June, 2013 TeraGrid Best Visualization Display Award, TeraGrid’11, July 24, 2011 SciDAC OASCR Visualization Award, May 2011 ACM Gordon Bell Finalist, Supercomputing’10, New Orleans, Nov 13-19, 2010 SciDAC OASCR Visualization Award, May 2009 Excellence Award for Scaling AWM-OLSEN to 40k BG/L processors, SDSC, 2006 Excellence Award for Parallelization of Regional Spectral Model RSM, SDSC, 2003 First Place of Science and Technology Progress Award from Ministry of Water Resources of China for joint project Hydrologic Cycles on Climate, 2001 Postdoctoral Fellowship, Scripps Institution of Oceanography, 2000-2001 State Baden-Wuerttemberg Graduate Scholarship, Germany, 1994-1996
SELECTED TALKS AND LECTURES
UCSD SE 290 Seminar, Feb 8, 2016 International Workshop on Co-design 2015, Wuxi, Nov 6-8, 2015 (invited) GTC’15, San Jose, March 16-20, 2015 (invited) ICTP Symposium on HPC and Data-Intensive Applications in Earth Sciences, Trieste, Nov 13-14, 2014 (invited) International Workshop on Co-design 2014, Guangzhou, Nov 6-8, 2014 (invited) MURPA Seminar, UQeensland, Oct 16, 2014 (invited) US-China-Germany E-Science and Cyberinfrastructure (CHANGES) 2014 Workshop, Beijing, Sept 10-12, 2014 (invited) OLCF Users Meeting, Oak Ridge, July 22-24, 2014 (invited) Simula Research Lab, Oslo, July 8, 2014 (invited) IHPCES’14/ICCS’14, Cairns, June 9-12, 2014 IGCC HPC Comparison Workshop, San Diego, April 29-30, 2014 (invited) HPC User Forum Meeting, Santa Fe, April 7-9, 2014 (invited) Int’l SPNS-2013 Workshop, Tokyo, Dec 5-6, 2013 (Plenary) University of Tokyo ASE Workshop, Tokyo, Dec 4, 2013 (invited) NVIDIA GPU Technology Theater @ SC13, Nov 20, 2013 (invited) Technical Paper, SC13, Denver, Nov 18, 2013 NVIDIA GPU Computing Symposium, San Diego, Nov 5-6, 2013 (invited) CS&E Colloquium Seminar, UCRiveside, Nov 4, 2013 (invited) Schlumberger HPC Workshop, Houston, Oct 1, 2013 (invited) XSEDE and Blue Waters Extreme Scaling Workshop, Boulder, Aug 15-16, 2013 Int’l Workshop of GPU and MIC Solutions to Multiscale Problems in Science and Engineering, Changchun, July 29-Aug 2, 2013 (invited) ICCS/IHPCES, Barcelona, June 5-7, 2013 (Chair) Int’l Conference on 3-D Wave Propagation and Imaging Through the Earth’s Interior, June 18-21, Wuhan, 2013 (invited) Lecture on High Performance Computing, San Diego State, April, 2013 GTC 2013, San Jose, Mar 18-21, 2013 ONERA/DSNA, France, Nov 19, 2012 (invited) HPC China Workshop at SC’12, Nov 13, 2012 (invited) International Workshop on Co-design, Beijing, Oct 23-25, 2012 (Plenary) SSA’12, San Diego, Apr 17, 2012 (invited) US-China Software Workshop, San Diego, March 05, 2012 (invited) SIAM PP’12, Savannah, Feb 15-17, 2012 (invited) International Workshop on Co-design, Beijing, Oct 25-26, 2011 (Keynote) 7th Int’l APEC Cooperation for Earthquake Simulation (APES) Workshop, Otaru, Oct 3-8, 2010 (Plenary) Int’l Conference of Numerical Analysis and Applied Mathematics (ICNAAM’10), Rhodes, September 19-25, 2010 (invited) IEEE Int’l Joint Conference on Computational Sciences and Optimization, Huangshan, May 2010 (Keynote) IBM HPC Scientific Computing User Group Annual Meeting (SciComP), San Francisco, May 2010 (invited) Int’l Symposium on Grid Computing, Taipei, Mar 2010 (Plenary) Int’l Symposium for "Integrated Predictive Simulation System for Earthquake and Tsunami Disaster", Tokyo, Japan, 2008 (Keynote) Western Pacific Geophysics Meeting, AGU Cairns, Australia, July 2008 (Plenary) NSF Blue Gene Applications Workshop, Cyberinstrastructure Channel, April 2007 (invited) Second Geoscience Application Requirements for Petascale Architectures (GARPA-2) Workshop, San Diego, February 2007 (invited) UCSD Physics 244: Parallel Computing Course for Graduate Students, 2007 Summer Institute Lectures, San Diego Supercomputer Center, 2001 - 2010
PROFESSIONAL ACTIVITIES
Affiliations
Member, Institute of Electrical & Electronics Engineers (IEEE) Member, Association for Computing Machinery (ACM) Member, Society for Industrial and Applied Mathematics (SIAM) Member, International Association of Hydrological Sciences (IAHS) Member, American Geophysical Union (AGU) Member, Seismological Society of America (SSA)
Service on National or Steering Committees
Chair, Computational Science Committee, Southern California Earthquake Center, 2012-2016 Planning Committee of Southern California Earthquake Center, 2012-2016 IDC Technical Computing Advisory Panel, 2014-date High Performance Computing Advisory Panel, Golden Energy Computing, 2013-date Technical Program Committee, XSEDE 2011-date TACC Petascale User Committee, 2006-2013 Parallel Tools Consortium Steering Committee, 2002-2004 Liaison of Parallel Tools and Environment with National Partnership for Advanced Computational Infrastructure (NPACI), 2002-2003
Service on International Conference Committees
Co-Chair, Int’l Workshop on Advances in High Performance Computational Applications and Frameworks (IHPCES), 2011-2013, 2016 Chair, Int’l Conference on Networking and Distributed Computing (ICNDC), 2016 Int’l Conference on Computational Sciences (ICCS), 2007, 2012-date Int’l Meeting on High Performance Computing for Computational Science (VECPAR), 2016 Co-Chair, VECPAR Scientific Committee, 2014 International Conference on Parallel Processing (ICPP), 2015 SIAM Conference on Computational Science & Engineering (CSE), 2015 Conference on Network and Parallel Computing (NPC), 2015 Technical Program Committee, SC’13/SC’14 Int’l Workshop of GPU Solutions to Multiscale Problems in Science and Engineering, 2011 Int’l Workshop on HPC and Grid Applications (IWHGA’10), 2010 Int’l Conference on Computational Sciences and Optimization (CSO), 2010/2011 Science Session Chair, TeraGrid’08 Best Paper Review Committee, 2008
Review for Journals
Journal of Parallel and Distributed Computing Journal of HPC Application Journal of Supercomputing Concurrency and Computation Geophysics Acta Geotechnica, Springer Lecture Notes in Computer Science Series, Springer eBook Synthesis Lectures, Morgan & Claypool Publishers
Review for Grant and Allocation Proposals
US National Science Foundation (NSF) Panels Southern California Earthquake Center Switzerland National Petascale Initiatives and Co-Design Proposals King Abdullah University of Science and Technology XSEDE XRAC Large Allocation Proposals
SELECTED RESEARCH GRANTS AND ALLOCATIONS
Selected Current Grants
PI, Intel Parallel Computing Center, Accurate and Efficient Earthquake Simulations on Intel Xeon Phi, $140,000, 10/2015 - 9/2016 NVIDIA Global Impact Award, $150,000, 5/2015 - Co-PI, NSF SI2-SSI: Community Software for Extreme-scale Computing in Earthquake System Science (Phase II), PI: T. Jordan (USC), $475,000, 06/2015 - 5/2018 Co-PI, NSF SI2-SSI: A Sustainable Community Software Framework, PI: T. Jordan (USC), $420,000 ($2.5 M total), 08/2012 - 07/2016 SDSC-PI, W.M. Keck Foundation, Collaboratory for Interseismic Simulation andcModeling (CISM), PI: T. Jordan (USC), $150,000, 07/2015-06/2018 Co-PI, NSF Geoinformatics: Community Computational Platforms for Developing Three-Dimensional Models of Earth Structure, $140,000, PI: T. Jordan (USC), 5/2014 - 4/2016 PI, NSF PRAC PAID IME Collaboration on Blue Waters, $75,000, 10/2015-9/2017 SDSC-PI, NSF FESD Type 1: Fault Earthquake System Dynamics, PI: J. Dieterich (UCR), $500,000 ($4.6 M total), 8/2011 - 8/2017 Co-PI, NSF Blue Waters Petascale Resource Allocation: Extending the Spatiotemporal Scales of Physics-based Seismic Hazard Analysis, PI: T.H. Jordan (USC), $40,000 Travel award (total), 07/2014 - 06/2016 Co-PI, The Research Council of Norway R&D: User-friendly Programming of GPU-enhanced Clusters via Automated Code Translation and Optimization, PI: X. Cai (SRL, Norway), $40K Travel award, 07/2012 - 06/2016
Selected Past Grants
Co-PI, NSF SI2-SSI: A Sustainable Community Software Framework, PI: T. Jordan (USC), $420,000 ($2.5 M total), 05/2012 - 04/2015 Co-PI, NSF SHF: Large: Collaborative Research: Unified Runtime for Supporting Hybrid Programming Models on Heterogeneous Architecture, PI: DK Panda (OSU), $118,498 ($1.8 M total), 05/2012 - 04/2015 Co-PI, NSF Geoinformatics: Community Computational Platforms for Developing Three-Dimensional Models of Earth Structure, $290,000 ($1.8 M total), PI: T. Jordan, (USC), 07/2012 - 06/2014 PI, SCEC Core: Accelerating CyberShake SGT Calculations on Heterogeneous Supercomputers, $35,000, 02/2012 - 12/2013 PI, NSF/NCSA: Phase 1 Enhanced Intellectual Services- Direct PRAC Support- Press-On Blue Waters, $75,000, 05/2012 - 09/2013 SDSC-PI, NSF Geoinformatics: A Petascale Cyberfacility for Physics-Based Seismic Hazard Analysis (PetaSHA-3), PI: T. Jordan (USC), $250,000 ($1.6 M total), 6/2010 - 12/2012 NSF PetaApps-2: Outward on the Spiral: Petascale Inference in Earthquake System Science (PetaShake-2), 8/2007 - 07/2011 NSF PetaApps-1: Collaborative Research: Enabling Earthquake System Science Through Petascale Calculations (PetaShake), 10/2007 - 09/2009 NSF PRAC: Petascale Research in Earthquake System Science on Blue Waters (PressOnBlueWaters), 10/2009 - 9/2011 NSF Geoinformatics: Petascale Cyberfacility for Physics-based Seismic Hazard Analysis (PetaSHA-2), 5/2008 - 4/2010
High Performance Computing Allocations
PI, NSF XSEDE Resource Allocation (XRAC): Earthquake and Fault System Dynamics Research, 27.8 M Core-hours, 10/2013-9/2016
Co-PI, NSF XSEDE Resource Allocation (XRAC): PetaSHA: An Earthquake System Science Approach to Physics-based Seismic Hazard Research, 133 M Core-hours in total, 2008-2013
Co-PI, NSF Blue Waters Petascale Resource Allocation (PRAC): Extending the Spatiotemporal Scales of Physics-based Seismic Hazard Analysis, 12.66 M Blue Waters Node-hours, 7/2004-6/2016 Co-PI, DOE INCITE: Physics-based Probabilistic Seismic Hazard Analysis / Deterministic Simulation of Large Regional Earthquakes at frequencies Up to 4 Hz, 223 M Processor-Hours on ORNL Jaguar/Titan and ANL Mira/Intrepid, 2009-2013; 433 M Processor-Hours on Titan/Mira, 2015-2016
Co-PI, NCAR University ASD: Community Computational Platforms for Developing 3D Models of Earth Structure, 8.5 M Core-Hours on NCAR Yellowstone, 08/2012-11/2012
Co-PI, Early Science Program: Using Multi-scale Dynamic Rupture Models to Improve Ground Motion Estimates, Department of Energy, 150 M ANL Next Generation Blue Gene core-hours, 2011-2013
PI, NSF XRAC Medium Resource Allocation: Parallelization of a Finite Element Code for Petascale Dynamic Modeling, 110 K core-hours, 2010-2011
PI, DOE INCITE: Blue Gene Watson Consortium Days, 2006 and 2007
COLLABORATORS & OTHER AFFILIATIONS
Collaborators
Scott Baden (UCSD), Michael Barall (Invisible), Bill Barth (UT), Greg Beroza (Stanford), Jacobo Bielak (CMU), Xing Cai (SRL, Norway), Scott Callaghan (USC), Po Chen (Wyoming), Zizhong Chen (UCR), Dongju Choi (SDSC), Amit Chourasia (SDSC), Stuart Clark (SRL), Elizabeth Cochran (USGS), Steve Day (SDSU), Mattias Christen (ULugano), Ewa Deelman (USC), Unat Didem (UCSD), James Dieterich (UCR), Eric Dunham (Stanford), Donat Faeh (ETH), Eric Fielding (NASA), Jacqui Gilchrist (UCSC), Clark Guest (UCSD), Alexander Heinecke (Intel), Wen-Mei Hwu (UIUC), Thomas H. Jordan (USC), Gideon Juve (USC), Jeff Larkin (NVIDIA), Masha Liukis (USC), Amit Majumdar (SDSC), Philip Maechling (USC), Kevin Milner (USC), David Oglesby (UCR), Kim Olsen (SDSU), Dhabaleswar K. (DK) Panda (Ohio State), Dmitry Pekurovsky (SDSC), Efecan Poyraz (Google), Keith Richards-Dinger (UCR), Daniel Roten (SDSU), William Sarvan (SDSU), Tim Scheitlin (NCAR), Olaf Schenk (ULugano), Karl Schulz (Intel), Zheqiang Shi (SDSU), Liwen Shih (UHouston), Bruce Shaw (Columbia), John Shaw (Harvard), Jonathan Stewart (UCLA), Ricardo Taborda (UMemphis), Mahidhar Tatineni (SDSC), Karen Tomko (Ohio State), Jeroen Tromp (Princeton), Terry Tullis (Brown), Karan Vahi (USC), Ray E. Wells (USGS), Kyle Withers (SDSU), Heming Xu (Fico), Farzin Zareian (UCI), Jun Zhou (Baidu)
Thesis Advisor and Postgraduate Scholar Sponsor (Last five years):
Harsha Basavaraj (2016, M.S.), Alexander Breuer (Postdoc, 2015-), Kunyao Chen (2014-2015, M.S.), Aravind Kimar K (2016, M.S.), Shashank Kaushik (2014-2015, M.S), Brajesh Kushwaha (2014, M.S.), Kwangyoon Lee (2009-2011, Ph.D.), Dawei Mu (postdoc, 2016-), Siyuan Mu (2014, M.S.), Hieu Nyugen (2009-2011, Ph.D.), Efecan Poyraz (2012-2014, Ph.D.), Sridhar S (2014, M.S.), Shiyu Song (2011-2012, Ph.D.), Josh Tonin (2016, Ph.D.), Gautam Wilkins (2016, Ph.D.), Jiyang Yu (2014-, Ph.D.), Boyan Zhang (2013-2014, M.S.), Jun Zhou (Thesis Advisor, 2012-2014, Ph.D),
RECENT PUBLICATIONS AND ABSTRACTS
Book or Book Chapters
1. Cui, Y., Chourasia, A., Moore, R., Olsen, K., Maechling, P., Jordan, T., The TeraShake Computational Platform for Large-scale Earthquake Simulations, Advances in Geocomputing, Lecture Notes in Earth Sciences 119, DOI 10.1007/978-3-540-85879-9_7, 229-278, editor H. Xing, Springer-Verlag Berlin Heidelberg, 2009. 2. Maechling, P., Deelman, E., Zhao, L., Graves, R., Mehta, G., Gupta, R., Mehringer, J., Kesselman, C., Callaghan, S., Okaya, D., Francoeur, H., Gupta, V., Cui, Y., Vahi, K., Jordan, T. and Field, E. “SCEC CyberShake Workflows—Automating Probabilistic Seismic Hazard Analysis Calculations”, in Workflows for e-Science, Ian Taylor et al. eds, 144-163, Springer, 2007 3. Kanamitsu, M., Kanamaru, H., Cui, Y., Juang, H., Parallel Implementation of Regional Spectral Atmospheric Model, Public Interest Energy Research Program (PIER) Project, California Energy Commission, 1-17, CEC-500-2005-014, Feb, 2005. 4. Cui, Y., Different Approaches towards an Understanding of Runoff Generation. Freiburger Schriften zur Hydrologie, Band 7 (ISSN 0945-1609), pp. 163, 1998.
Journal Papers
1. Roten, D., Olsen, K.B., Day, S.M., Cui, Y. and Fäh, D., Expected seismic shaking in Los Angeles reduced by San Andreas fault zone plasticity, Geophysical Research Letters, 41, No. 8, 2769-2777, doi:10.1002/2014GL059411, April, 2014. 2. Xu, H., Cui, Y., Dieterich, J., Richards-Dinger, K., Poyraz, E. and Choi, D., Aftershock sequence simulations using synthetic earthquakes and rate-state seismicity formulation, Earthquake Science, Special Issue, 27(4), 401-410, Springer. DOI 10.1007/s11589-014-0087-7. 3. Unat, D., Zhou, J., Cui, Y., Cai, X. and Baden, S.: Accelerating an Earthquake Simulation with a C-to-CUDA Translator, Journal of Computing in Science and Engineering, Vol. 14, No. 3, 48-58, May/June, CiSESI-2011-09-0094, May, 2012. 4. Olsen, K. B., Dalguer, L., Day, S., Cui, Y., Zhu, J., Cruz, V.M., Roten, D., Mayhew, J., Maechling, P., Jordan, T., Chourasia, A. and Okaya, D. ShakeOut-D: Ground Motion Estimates Using an Ensemble of Large Earthquakes on the Southern San Andreas Fault With Spontaneous Rupture Propagation, Geophysical Research Letters, 36, L04303, 1-6, doi:10.1029/ 2008GL036832, 2009. 5. Bielak, J., Graves, R., Olsen, K., Taborda, R., Ramirez-Guzman, L., Day, S., Ely, G., Roten, D., Jordan, T., Maechling, P., Urbanic, J., Cui, Y. and Juve, G.: The ShakeOut Earthquake Scenario: Verification of Three Simulation Sets. Geophysical Journal International, Vol. 80, 375-404, 10.1111/j.1365-246X.2009. 04417.x, October, 2009. 6. Cui, Y., Moore, R., Olsen, K., Chourasia, A., Maechling, P., Minster, B., Day, S., Hu, Y., Zhu J., Jordan, T., Towards Petascale Earthquake Simulations, Acta Geotechnica, 4 (2), 79-93, DOI 10.1007/S11440-008-0055-2, Springer, 2008. 7. Olsen, K. B., S. M. Day, J. B. Minster, Y. Cui, A. Chourasia,, D. Okaya, P. Maechling, and T. Jordan. TeraShake2: Spontaneous Rupture Simulations of Mw7.7 Earthquakes on the Southern San Andreas Fault Bull Seis. Soc. Am., 98 (3), 1162-1185, June, 2008. 8. Cui, Y., Moore, R., Olsen, K., Chourasia, A., Maechling, P., Minster, B., Day, S., Hu, Y., Zhu J., Majumdar, A., Jordan, T., Enabling Very-Large Scale Earthquake Simulations on Parallel Machines, Advancing Science and Society through Computation”, International Conference on Computational Science 2007, PART I, Lecture Notes in Computer Science Series 4487, 46-53, Springer, 2007. 9. Chourasia. A. Cutchin, S. M., Olsen. K.B., Minster. B., Day. S., Cui. Y., Maechling. P., Moore. R., Jordan. T., Insights gained through visualization for large earthquake simulations, Discovering the Unexpected, Computer Graphics and Application Journal, Vol. 27, No. 6, 28-34, September/October, 2007. 10. Faerman, M, Moore, R., Cui, Y., Hu, Y., Zhu, J., Minister, B., and Maechling, P., Large Scale Data for Earthquake Simulations, Journal of Grid Computing, 1-12, DOI 10.1007/s10723-007-9072-x, Springer-Verlag, 2007. 11. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Maechling, P. and Jordan, T., Strong Shaking in Los Angeles Expected From Southern San Andreas Earthquake, Geophysical Research Letters, 33(7), 1-4, 2006.
Conferences Proceedings
1. Roten, D., K. B. Olsen, Y. Cui, and S. M. Day, Quantification of fault zone plasticity effects with spontaneous rupture simulations, Workshop on Best Practice in Physics-Based Fault Rupture Models for Seismic Hazard Assessment of Nuclear Installations, Vienna, Austria, Nov 18-20, 2015. 2. Poyraz, E., Xu, H. and Cui, Y., Application-specific I/O Optimizations on Petascale Supercomputers, Proceedings of International Conference on Computational Science, Vol 29, 910-923, Elsevier, Cairns, June 10-12, 2014. 3. Cui, Y., Poyraz, E., Olsen, K., Zhou, J., Withers, K., Callaghan, S., Larkin, J., Guest, C., Choi, D., Chourasia, A., Shi, Z., Day, S., Maechling, P. and Jordan, T., Physics-based Seismic Hazard Analysis on Petascale Heterogeneous Supercomputers, Technical Paper, SC13, Denver, Nov 17-22, 2013 (in press) 4. Chourasia, A., Cui, Y., Poyraz, E., Olsen, K., Zhou, J., Withers, K., Callaghan, S., Larkin, J., Guest, C., Choi, D., A., Shi, Z., Day, S., Maechling, P. and Jordan, Visualization Of Deterministic High-Frequency Ground Motions From Simulations Of Dynamic Rupture Along Rough Faults With And Without Medium Heterogeneity Using Petascale Heterogeneous Supercomputers, SC’2013 Visualization Showcase, Denver, Nov 17-22, 2013. 5. Scheitlin, T., Domingo, P., Olsen, K., Sarvan, W., Cui, Y., Poyraz, E., Maechling, P. and Jordan, T., Simulated Wave Propagation for the Mw5.4 Chino Hills, CA, Earthquake, Including a Statistical Model of Small‐Scale Heterogeneities, SC2013 Visualization Showcase, Denver, Nov 17-22, 2013. 6. Callaghan, S., Maechling, P., Vahi, K., Juve, G., Deelman, E., Cui, Y., Poyraz, E., Jordan, T., Running A Seismic Workflow Application on Distributed Resources, Poster, SC13, Denver, Nov 17-22, 2013 7. Cui, Y., Poyraz, E., Zhou, J., Callaghan, S., Maechling, P., Jordan, T., Shih, L. and Chen, P., Accelerating CyberShake Calculations on XE6/XK7 Platforms of Blue Waters, Proceeding of Extreme Scaling Workshop 2013, August 15-16, Boulder, 2013, IEEE Xplore Digital Library. 8. Xu, H., Y. Cui, DJ Choi, E. Poyraz, K. Ricards-Dinger, J.H. Dieterich, Large-scale Earthquake Rupture Simulations Using a Hybrid Method, XSEDE’13, Poster, San Diego, July 22-25, 2013. 9. Zhou, J., Y. Cui, E. Poyraz, D. Choi, and C. Guest, Multi-GPU implementation of a 3D finite difference time domain earthquake code on heterogeneous supercomputers, Proceedings of International Conference on Computational Science, Vol. 18, 1255-1264, Elsevier, ICCS 2013, Barcelona, June 5-7, 2013. 10. Cui, Y., Petascale simulations of strong motion and tomographic seismology using AWP-ODC, Int’l Conference on 3-D Wave Propagation and Imaging Through the Earth’s Interior, June 18-21, Wuhan, 2013. 11. Christen, M., O. Schenk, and Y. Cui, PATUS for Convenient High-Performance Stencils: Evaluation in Earthquake Simulations, Technical Paper, SC12, Salt Lake City, Nov 10-16, 2012. 12. Chourasia, A., Zhou, J., Cui, Y., Choi, DJ, Olsen, K.: Role of visualization in porting a seismic simulation from CPU to GPU architecture (Visualization Showcase), XSEDE’12, Chicago, July 16-20, 2012. 13. Zhou, J., Choi, DJ, Cui, Y.: GPU acceleration of a 3D finite difference earthquake code on XSEDE Keeneland, XSEDE’12, Chicago, July 16-20, 2012. 14. Zhou, J., Didem, U., Choi, D., Guest, C. & Y. Cui, Hands-on Performance Tuning of 3D Finite Difference Earthquake Simulation on GPU Fermi Chipset, Proceedings of International Conference on Computational Science, Vol. 9, 976-985, Elesvier, ICCS 2012, Omaha, Nebraska, June, 2012. 15. Cui, Y., Olsen, K., Jordan, T., Lee, K., Zhou, J., Small, P., Ely, G., Roten, D., Panda, DK, Chourasia, A., Levesque, J., Day, S. and Maechling, P., Scalable Earthquake Simulation on Petascale Supercomputers, Gordon Bell Finalist, Supercomputing’10, 1-20, New Orleans, Nov, 2010. 16. Cui, Y., Looking forward to Architecture Changes with Seismic Wave Propagation Using a 3D Finite Difference Code, Int'l Conference of Numerical Analysis and Applied Mathematics, pp. 1781, edited by T. E. Simos, G. Psihoyios, and Ch. Tsitouras, Rhodes, Greece, 19-25 September 2010. 17. Zhou, J., Cui, Y., Davis, S., Guest, C., Maechling, P., Workflow-Based High Performance Data Transfer and Ingestion to Support Petascale Simulations, IEEE Comput. Sciences and Optimization (CSO’10), vol. 1, 343-347, May 2010. 18. Potluri, S., Lai, P., Tomko, K., Cui, Y., Tatineni, M., Barth, W., Majumdar, A. and Panda, DK: , “Quantifying performance benefits of overlap using MPI-2 in a seismic modeling application”, Proceedings of the 24th ACM Int’l Conference on Supercomputing, 17-25, doi: 10.1145/1810085.1810092, 2010. 19. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.-B., Graves, R.W., Bielak, J., Taborda , R., Beroza , G., Ma, S., Cui , Y., Urbanic , J., and Callaghan , S., The Big Ten Earthquake Scenarios for Southern California, SRL, 81(2), pp. 311, 2010. 20. Lee, K., Cui, Y., Maechling, P., Olsen, K. and Jordan, T., Communication Optimizations of SCEC CME AWP-Olsen Application for Petascale Computing (Best Poster Finalist), Supercomputing 09, Portland, 2009. 21. Lee, K., Cui, Y., Kaiser, T., Maechling, P., Olsen, K. and Jordan, T., IO Optimizations of SCEC CME AWP-Olsen Application for Petascale Earthquake Computing (Best Poster Finalist), Supercomputing 09, Portland, 2009. 22. Maechling, P., Deelman, E., Cui, Y., Implementing Software Acceptance Tests as Scientific Workflows, International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’09), Las Vegas, July 13-16, 2009. 23. Maechling, P., Muench, H., Francoeur, H., Okaya, D., Cui, Y.: SCEC Earthworks Science Gateway: Interactive Configuration and Automated Execution of Earthquake Simulations on the TeraGrid. BroadeningParticipation in TeraGrid, TeraGrid’07 Conference, Madison, June 4-8, 2007. 24. Muench, J., Maechling, P., Francoeur, H., Okaya, D., Cui, Y., 2006: SCEC/CME Earthworks Science Gateway: Widening SCEC Community Access to the TeraGrid. Advancing Scientific Discovery, TeraGrid’06 Conference, Indianapolis, June, 2006. 25. Cui, B., Moore, R., Olsen, K., Chourasia, A., Y. Hu, J. Zhu, Minster, B., Maechling, P., Enabling a Large-scale Application on the TeraGrid, Advancing Scientific Discovery, TeraGrid’06 Conference, Indianapolis, June, 2006. 26. Cui, Y., Juang, H.-M. H., Chukkapalli, G. and Kanamitsu, M., Development and Performance of a Massively Parallel Regional Spectral Model, Proceeding of the High Performance Computing & Simulation Conference, 83-89, ISBN 3-936150-35-4 (book), June 13-16, Magdeburg, Germany, 2004. 27. Olsen, K.B., Minster, J.-B., Moore, R., Day, S., Maechling, P., Jordan, T., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majumdar, A., Chukkapalli, G., Xin, Q., Moore, R., Banister, B., Thorp, D., Kovatch, P., Diegel, L., Sherwin, T., Jordan, C., Thiebaux, M., Lopez, J., SCEC TeraShake - Supporting an Earthquake Storage Intensive Simulation, Proceedings of the SC2004 High Performance Computing, Networking and Storage Conference, November, 2004.
Conferences Abstracts
1. Cui, Y., Acceleration of Physics-based Seismic Hazard Analysis on Hybrid Many-core Architectures, SPNS’2013, Tokyo, Dec 6, 2013. 2. Cui, Y., A. Chourasia and B. Minster, The Past, Present and Future of Big Data for Extreme-scale Earthquake Simulation, Big Data Workshop, UCSD, Nov 15, 2013. 3. Cui, Y, E. Poyraz, J. Zhou, S. Callaghan, P.J. Maechling, T.H. Jordan, L. Shih and P. Chen, Accelerating CyberShake Calculations on Petascale Heterogeneous Supercomputers, 2013 SCEC Annual Meeting, September 8-11, 2013. 4. Cui, Y., Physics-based Seismic Hazard Analysis on Petascale Supercomputers, Int’l Workshop of GPU and MIC Solutions to Multiscale Problems in Science and Engineering (GPU-SMP), Changchun, July 29-August 2, 2013. 5. Cui, Y., J. Zhou, E. Poyraz, DJ Choi, P.J. Maechling and T.H. Jordan, Accelerating Seismic Wave Propagation Simulations for Future Eartthquake Sciece, Blue Waters Symposium, Urbana, May 21-22, 2013. 6. Cui, Y., Accelerating Seismic Wave Propagation Simulation on Petascale Heterogeneous Architectures. GTC’13, San Jose, March 24-27, 2013. 7. Cui, Y., Zhou, J. and Choi, D., A 77-Fold Speedup and 100 Tflops Acceleration of Seismic Wave Propagation AWP-ODC on heterogeneous supercomputers, Eos Trans, AGU 93(40), Fall Meet. Suppl., Abstract IN33A-1531, Dec, 2012. 8. Poyraz, E., Zhou, J., Choi, DJ, Chourasia, A. and Cui, Y.: A 77-fold speedup and 100 Tflops acceleration of seismic wave propagation AWP-ODC on Heterogeneous Supercomputers, 2012 SCEC Annual Meeting, September 9-12, Palm Springs, 2012. 9. Cui, Y., Olsen, K.B., Zhou, J., Small, P., Chourasia, A., Choi, D., Day, S., Maechling, P. & Jordan, T., Development and Optimizations of a SCEC Community Anelastic Wave Propagation Platform for Multicore Systems and GPU-based Accelerators, SRL, vol. 83, no. 2, pp. 396, SSA’2012, San Diego, April 17-19, 2012 10. Cui, Y., Olsen, K., Jordan, T., Day, S., Panda, DK, Chourasia, A., Levesque, J. and Maechling, P., Petascale Simulation of Regional Seismic Wave Propagation Using AWP-ODC, SIAM PP’12, Savannah, Feb 15-17, 2012. 11. Zhou, J., S. Callaghan, S. Song, P. Chen, K. Olsen, R. Graves, P. Small, P. Maechling, Y. Cui, and T. Jordan. “AWP-ODC-SGT: Wave Propagation and Dynamic Rupture Simulation Software with Strain Green’s Tensor (SGT) for CyberShake 2.0”, 2011 SCEC Annual Meeting, Palm Spring, September 11-14, 2011. 12. Zhou, J., Choi, D. and Cui, Y. “Acceleration of 3D Finite Difference AWP-ODC for Seismic Simulation on GPU Fermi Architecture”, 2011 SCEC Annual Meeting, Palm Spring, September 11-14, 2011. 13. Jordan, T.H., Cui, Y., Olsen, K.B., Graves, R.W., Maechling, P.J., Day, S.M., Callaghan, S., Milner, K. “ From M8 to CyberShake: Using Large-Scale Numerical Simulations to Forecast Earthquake Ground Motions (invited). Eos Trans, AGU 91(55), Fall Meet. Suppl., Abstract, U13B-04, San Francisco, 13-17 Dec. 2010. 14. Maechling, P J, Kumar, S., Krishnan, Cui, Y., Olsen, K.B., Chourasia, A., Ely, G.P., Jordan, T.H. “SCEC VShaker Project: Visualization of Steel Building Response to Ground Mortion Time Histories”, Eos Trans, AGU 91(55), Fall Meet. Suppl., Abstract, S41A-2009, San Francisco, 13-17 Dec. 2010. 15. Olsen, K.B., Day, S.M., Dalguer, L.A., Cui, Y., Maechling, P., Jordan, T.H., Chourasia, A., Okaya, D. “ Intra-event Uncertainty of Long-Period Ground Motions for Large Earthquakes with Southeast-Northwest Rupture Directions on the Southern San Andreas Fault,” SRL, vol. 81, no. 2, pp. 329, SSA 2010 Annual Meeting, Portland, OR, April 21-23, 2010. 16. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R.W., Bielack, J., Taborda, R., Beroza, G., Cui, Y., Urbanic, J., Callaghan, S. “The Big Ten Earthquake Scenarios for Southern California,” SRL, vol. 81, no. 2, pp. 311, SSA 2010 Annual Meeting, Portland, OR, April 21-23, 2010. 17. Lee, K., Cui, Y., Maechling, P., Olsen, K.B., Jordan, T.H. “ Communication Optimizations of SCEC PetaShake Application,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 18. Lee, K., Cui, Y., Kaiser, T.H., Maechling, P., Olsen, K.B., Jordan, T.H. “Parallel IO Optimizations for SCEC ShakeOut-D Simulations,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 19. Maechling, P., Jordan, T.H., Beroza, G.C., Bielak, J., Chen, P., Cui, Y., Day, S., Deelman, E., Graves, R., Minster, J.B., Olsen, K.B., CME Collaboration. “SCEC PetaSHA-2 and PetaShake-2 Projects: Large scale Numerical Modeling in Support of SCEC Earthquake System Science,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 20. Nguyen, H.T., Cui, Y., Olsen, K.B., Lee, K. “ Single CPU Optimizations of SCEC AWP-Olsen Application,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 21. Zhou, J., Cui, Y., Lee, K. “Automatic End-to-End Workflow to Support SCEC Capability Simulations on Teragrid,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 22. Ely, G.P., Jordan, T.H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R., Bielak, J., Taborda, R., Beroza, G., Ma, S., Cui, Y., Urbanic, J., Callaghan, S. “ The Big Ten Earthquake Scenarios For Southern California,” Poster, 2009 SCEC Annual Meeting, Palm Springs, CA, Sep. 12-16, 2009. 23. Ely, G., Jordan, T,H., Maechling, P., Olsen, K.B., Day, S.M., Minster, J.B., Graves, R.W., Ma, S., Beroza, G.C, Bielak, J., Taborda, R., Cui, Y., Urbanic, J., Callaghan, S., “ The Big Ten earthquake scenarios for Southern California,” Eos Trans. AGU, 90(47), Fall Meet. Suppl., Abstract S34A-03, 2009. 24. Bielak, J., Graves, R.W., Olsen, K., Taborda, R., Ramirez-Guzman, L., Day, S., Ely, G., Roten, D., Jordan, T., Maechling, P., Urbanic, J., Cui, Y., Juve, G. “ShakeOut simulations - verification,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, S33A-1921, 2008. 25. Cui, Y., Kaiser, T., Zhu, J., Lee, K., Maechling, P., Olsen, K.B., Jordan, T.H. “SCEC CME AWP-Olsen Application Enhancements for Petascale Computing,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. 26. Cui, Y., Zhu, J., Chourasia, A., Olsen, K.B., Dalguer, L.A., Lee, K., Davis, S., Day, S., Juve, G., Maechling, P., Jordan, T.H. “ Supporting SCEC PetaShake Simulations,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. 27. Dalguer, L.A., Day, S.M., Olsen, K.B., Cruz-Atienza, V.M., Cui, Y., Zhu, J., Gritz, A., Okaya, D., Maechling, P. “Implications of the ShakeOut Source Description for Rupture Complexity and Near-Source Ground Motion,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. 28. Maechling, P., Jordan, T.H., Archuleta, R., Beroza, G., Bielak, J., Chen, P., Cui, Y., Day, S.M., Deelman, E., Graves, R., Minster, J.B., Olsen, K.B. “SCEC Research Using High Performance Computing by the SCEC/CME Collaboration,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. 29. Olsen, K.B., Day, S.M., Dalguer, L.A., Cui, Y., Zhu, J., Mayhew, J., Maechling, P., Jordan, T.H., Chourasia, A., Okaya, D. “ShakeOut-D: Ground Motion Estimates using an Ensemble of Large Earthquakes on the Southern San Andreas Fault with Spontaneous Rupture Propagation,” Poster, 2008 SCEC Annual Meeting, Palm Springs, CA, Sep. 6-11, 2008. 30. Olsen, K., Day, S., Cui, Y., Zhu, J., Chourasia, A., Moore, R., Maechling, P., Jordan, T. “SCEC ShakeOut2 Simulations of Large Earthquakes on the Southern San Andreas,” SEG 2008 Annual Meeting, Las Vegas, NV, Nov 9-14, 2008. 31. Olsen, K., Day, S., Dalguer, L., Mayhew, J., Roten, D., Cui, Y., Zhu, J., Cruz-Atienza, V., Maechling, P., Jordan, T., Okaya, D., Chourasia, A. “ShakeOut-D: Ground Motion Estimates Using an Ensemble of Large Earthquake on the southern San Andreas Fault with Spontaneous Rupture Propagation,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, S51D-1796, 2008. 32. Maechling, P., Jordan, T., Archuleta, R., Beroza, G., Bielak, J., Chen, P., Cui, Y., Day, S., Deelman, E., Graves, R.W., Minster, J.B., Olsen, K. “SCEC Earthquake System Science Using High Performance Computing,” Eos Trans, AGU 89(53), Fall Meet. Suppl., Abstract, IN51A--1141, 2008. 33. Cui, Y., Zhu, J., Olsen, K.B., Chourasia, A., Moore, R., Dalguer, L.A., Day, S.M., Cruz-Atienza, V., Maechling, P., Jordan, T.H. “ PetaSHA Simulations Optimization,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. 34. Cui, Y., Moore, R., Olsen, K., Zhu, J., Dalguar, L., Day, S., Cruz-Atienza, V., Maechling, P., Jordan, T. “Mapping PetaSHA applications to TeraGrid Architectures,” Eos Trans, AGU 88(52), Fall Meet. Suppl., Abstract, IN21B-0483, 2007. 35. Dalguer, L.A., Day, S.M., Olsen, K.B., Cruz-Atienza, V., Cui, Y., Zhu, J., Rojas, O., Gritz, A., Okaya, D., Maechling, P. “DynaShake platform and dynamic source models for the southern San Andreas Fault ShakeOut,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. 36. Olsen, K.B., Day, S.M., Cui, Y., Zhu, J., Juve, G., Maechling, P. “ShakeOut: 1 Hz ground motion simulations for the southern San Andreas fault,” Poster, 2007 SCEC Annual Meeting, Palm Springs, CA, Sep. 9-12, 2007. 37. Maechling, P.J., Jordan, T.H., Okaya, D., Olsen, K.B., Cui, Y., Moore, R., Muench, J. “Developing a Community Earthquake Wave Propagation Code for Seismology: The TeraShake Example,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, Kona, HI, April 11-13, 2007. 38. Callaghan, S., Graves, R., Zhao, L., Gupta, N., Mehta, G., Okaya, D., Deelman, E., Field, E., Cui, Y., Mehringer, J., Kesselman, C., Maechling, P., Jordan, T.H. “SCEC CyberShake Platform: Probabilistic Seismic Hazard Analysis Using 3D Seismic Wave Form Modeling,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 39. Cui, Y., Olsen, K.B., Day, S.M., Chourasia, A., Hu, Y., Zhu, J., Kremenek, G., Moore, R., Minster, J.B., Maechling, P., Jordan, T.H. “Optimization and Execution of Large-Scale Terashake 2 Earthquake Simulations”, Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 40. Cui, Y., Olsen, K , Hu, Y , Day, S , Dalguer, L , Minster, J, Moore, R , Zhu, J , Maechling, P, Jordan, T. “Optimization and Scalability of an Large-Scale Earthquake Simulation Application,” Eos Trans, AGU 87(52), Fall Meet. Suppl., Abstract, S41C-1351, 2006. 41. Dalguer, L.A., Day, S.M., Olsen, K.B., Cui, Y. “Implementation of the Staggered-Grid Split-Node Method in a MPI Finite Difference Code for large scale models of Spontaneous Dynamic Rupture Simulation,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 42. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Moore, R., Hu, Y., Zhu, J., Maechling, P. “SCEC TeraShake Simulations: High Resolution Simulation of Large Southern San Andreas Earthquakes Using the TeraGrid,” Advancing Scientific Discovery, TeraGrid’06 Conference. Indianapolis, June, 2006. 43. Graves, R., Maecchling, P., Zhao, L., Mehta, G., Gupta, N., Mehringer, J., Deelman, E., Kesselman, C., Callagham, S., Cui, Y., Field, E., Gupta, V., Jordan, T., Okaya, D., Vahi, K. “SCEC CyberShake Platform: Incorporating Deterministic 3D Waveform Modeling into Probabilistic Seismic Hazard Curves,” Seismological Society of Amercia Annual Meeting, Abstract Z8, 2006. 44. Gupta, N., Callaghan, S., Graves, R., Mehta, G., Zhao, L., Deelman, E., Jordan, T.H., Kesselman, C., Okaya, D., Cui, Y., Field, E., Gupta, V., Vahi, K., Maechling, P.J. “Calculating the Probability of Strong Ground Motions Using 3D Seismic Waveform Modeling - SCEC CyberShake,” Eos Trans. AGU 87(52), Fall Meet. Suppl., Abstract, IN53B-0824, 2006. 45. Hu, Y., Zhu, J., Cui, Y., Kremenek, G., Moore, R. “SRB Digital Library Data Management for SCEC,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 46. Maechling, P., Jordan, T., Bernard Minster, J., Olsen, K., Day, S., Archuleta, R., Bielak, J., O’Hallaron, D., Okaya, D., Field, E., Francoeur, H., Muench, J., Callaghan, S., Gupta, N., Gupta, V., Cui, Y. (2006), “Using the SCEC Computational Platforms for Seismic Hazard Analysis Research,” Geoinformatics 2006, USGS Reston VA, May 2006 47. Deelman, E., Maechling, P., Graves, R., Zhao, L., Mehta, G., Gupta, N., Kesselman, C., Callaghan, S., Cui, Y., Field, E., Gupta, V., Jordan, T., Okaya, D., Gullapalli, S., Vahi, K. “SCEC Earthquake System Science Research Using the Power of the Grid (2006),” GlobusWorld 2006, Washington D.C., Sept 14, 2006 48. Francoeur, H., Muench, J., Okaya, D., Cui, Y., Maechling, P., Deelman, E., Mehta, G., Jordan, T. “SCEC Earthworks: Community Access to Wave Propagation Simulations,” Geoinformatics, 2006 Conference, Abstract, 2006. 49. Graves, R., Maechling, P., Zhao, L., Mehta, G., Gupta, N., Mehringer, J., Deelman, E., Kesselman, C., Callaghan, S., Cui, Y., Field, E., Gupta, V., Jordan, T.H., Okaya, D., Vahi, K. “SCEC CyberShake Platform: Incorporating Deterministic 3D Waveform Modeling into Probabilistic Seismic Hazard Curves,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, San Francisco, CA, April 18-22, 2006. 50. Olsen, K.B., Say, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Hu, Y., Zhu, J., Li, Y., Maechling, P., Jordan, T.H. “TeraShake: Strong Shaking in Los Angeles Expected from Southern San Andreas Earthquake,” SRL, vol. 77, no. 2, SSA 2006 Annual Meeting, San Francisco, CA, April 18-22, 2006. 51. Okaya, D., Francoeur, H., Muench, J., Cui, Y., Maechling, P., Deelman, E., Mehta, G., Jordan, T.H. “SCEC Earthworks Science Gateway: Widening SCEC Community Access to the Teragrid”, Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 52. Zhu, J., Hu, Y., Cui, Y., Kremenek, G., Moore, R., Maechling, P. “Digital Library for Terashake Earthquake Simulations,” Poster, 2006 SCEC Annual Meeting, Palm Springs, CA, Sep. 10-13, 2006. 53. Cui, Y., Chukkapalli, G., Brieger, L., Majumdar, A. “SDSC’s Strategic Applications Collaborations Program Helps SCEC Researchers with Terascale Earthquake Simulation,” SCEC 2005 Annual Meeting, Palm Springs, CA, Sep.11-14, 2005. 54. Maechling, P., Callaghan, S., Cui, Y., Faerman, M., Field, E., Graves, R., Gupta, N., Gupta, V., Jordan, T.H., Kesselman, C., Mehringer, J., Mehta, G., Okaya, D., Vahi, K., Zhao, L. “SCEC/CME CyberShake: Calculating Probabilistic Seismic Hazard Curves Using 3D Seismic Waveform Modeling,” SCEC 2005 Annual Meeting, Palm Springs, CA, Sep.11-14, 2005. 55. Minster, J., Olsen, K., Day, S., Cui, Y., Faerman, M., Moore, R., Okaya, D., Jordan, T., Archuleta, R., Hu, Y., Ely, G. “TeraShake-2: Next Steps,” Eos Trans. AGU, 86(52), Fall Meet. Suppl., IN21D-08, INVITED, 2005. 56. Callaghan, S., Maechling, P., Cui, Y., Faerman, M., Field, E., Graves, R., Gupta, N., Gupta, V., Jordan, T.H., Kesselman, C., Mehta, G., Okaya, D., Vahi, K., Zhao, L. “SCEC/CME CyberShake: Probabilistic Seismic Hazard Analysis Using 3D, Seismic Waveform Modeling,” Eos Trans. AGU 86(52), Fall Meet. Suppl., Abstract, IN23B-1212, 2005. 57. Olsen, K., Day, S.M., Minster, J.B., Cui, Y., Chourasia, A., Faerman, M., Moore, R., Hu,Y., Zhu, J., Li, Y., Maechling, P., Jordan, T. “TeraShake: Strong Shaking in Los Angeles Expected From Southern San Andreas Earthquake,” Eos Trans, AGU 86(52), Fall Meet. Suppl., Abstract, S52A-03, 2005. 58. Olsen, K.B., Day, S.M., Minister, J.B., Cui, Y., Chourasia, A., Hu, Y., Li, Y., Zhu, J., Faerman, M., Moore, R., Maechling, P., Jordan, T.H. “Terashake: Large-Scale Simulations of Earthquakes on the Southern San Andreas Fault”, 2005 SCEC Annual Meeting, Palm Springs, CA, Sep. 11-14, 2005. 59. Minster, J., Olsen, K B., Moore, R., Day, S., Maechling, P., Jordan, T., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majundar, A., Chukkapalli, G., Xin, Q., Banister, B., Thorp, D., Kovatch, P., Diegel, L., Sherwin, T., Jordan, C., Thiebaux, M., Lopez, J. “The SCEC TeraShake Earthquake Simulation,” Eos Trans. AGU, 85(47), Fall Meet. Suppl., Abstract SF31B-05 INVITED, 2004. 60. Olsen, K.B., Minster, J.B., Moore, R., Day, S.M. Day, Maechling, P., Jordan, T.H., Faerman, M., Cui, Y., Ely, G., Hu, Y., Shkoller, B., Marcinkovich, C., Bielak, J., Okaya, D., Archuleta, R., Wilkins-Diehr, N., Cutchin, S., Chourasia, A., Kremenek, G., Jagatheesan, A., Brieger, L., Majumdar, A., Chukkapalli, G., Xin, Q., Moore., R., Banister, B., Thorm, D., Kovatch, P., Diegel, L., Sherwin, T., Thiebaux, M., Lopez, J. “SCEC TeraShake- Supporting an Earthquake Storage Intensive Simulation,” SCEC 2004 Annual Meeting, Palm Springs, CA, Sep.19-22, 2004.
SELECTED PRESS COVERAGE
PERSONAL INFORMATION
U.S. Citizen, Languages in Chinese and German
Teaching
Tutorials, Courses and Seminars
- SS 2015
- High Performance Computing, seminar
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- WS 2014
- Scientific Computing: Molecular Dynamics, bachelor practical course
- Tsunami-Simulation, bachelor practical course
- High Performance Computing, master practical course
- SS 2014
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- WS 2013
- Advanced Programming, lectures
- High Performance Computing, master practical course
- SS 2013
- Tsunami-Simulation, bachelor practical course
- Numerical Methods for Hyperbolic PDEs: From Traffic Simulation to Earthquakes and Tsunamis, seminar
- WS 2012/2013
- Scientific Computing: Molecular Dynamics, bachelor practical course
- Summer 2012
- Gene Golub SIAM Summer School 2012 - Simulation and Supercomputing in the Geosciences, teaching assistant
- SS 2012
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- Numerical Programming, tutorials, programming assignments
- WS 2011/2012
- Discrete Structures, tutorials
Student projects
- October 2015
- P. Gomez, Master's thesis - A Hardware-aware ADER-DG Method for Hyperbolic Partial Differential Equations
- August 2015
- J. Klicpera, Bachelor's thesis - Fault Parameterization and Rough Fault Earthquake Simulations in SeisSol
- August 2015
- F. Späth, Bachelor's thesis - In-situ Visualisierung von Tsunami-Simulationen auf verteilten Systemen
- August 2014
- L. Rannabauer, Bachelor's thesis - Runge-Kutta and ADER discontinuous Galerkin schemes for hyperbolic partial differential equations
- March 2014
- F. Gratl, Bachelor's thesis - Workflow automation of verification and performance tests for SeisSol
- December 2013
- L. Rannabauer, Bachelor's thesis - Q-bench: implementation and parametrisation of a routine to evaluate the quality of traffic information
- October 2013
- L. Spiegelberg, Bachelor's thesis - Ocean circulation studies in the Labrador Sea
- July 2013
- W. Hölzl, Bachelor's thesis - Vectorization and GPGPU-Acceleration of an Augmented Riemann Solver for the Shallow Water Equations
- June 2013
- M. Müller, Interdisciplinary Project - Global Tsunami Simulation on Distorted Adaptive Triangular-Grids
- March 2013
- A. Bakhtiari and D. Pinaev, BGCE Honours Project 2012 - Implementation of a 3D Model for Seismic Simulations on Adaptive Refined Meshes in PeanoClaw
- November 2012
- D. Gudu, Master's Thesis - Parallel Tsunami Simulations With Block-Structured Adaptive Mesh Refinement
- June 2012
- S. Rettenberger, Master's Thesis - A parallel server for adaptive geoinformation in computational fluid dynamics
Teaching
Tutorials, Courses and Seminars
- SS 2015
- High Performance Computing, seminar
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- WS 2014
- Scientific Computing: Molecular Dynamics, bachelor practical course
- Tsunami-Simulation, bachelor practical course
- High Performance Computing, master practical course
- SS 2014
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- WS 2013
- Advanced Programming, lectures
- High Performance Computing, master practical course
- SS 2013
- Tsunami-Simulation, bachelor practical course
- Numerical Methods for Hyperbolic PDEs: From Traffic Simulation to Earthquakes and Tsunamis, seminar
- WS 2012/2013
- Scientific Computing: Molecular Dynamics, bachelor practical course
- Summer 2012
- Gene Golub SIAM Summer School 2012 - Simulation and Supercomputing in the Geosciences, teaching assistant
- SS 2012
- Numerical Methods for Earthquake and Tsunami Simulation, seminar
- Numerical Programming, tutorials, programming assignments
- WS 2011/2012
- Discrete Structures, tutorials
Student projects
- October 2015
- P. Gomez, Master's thesis - A Hardware-aware ADER-DG Method for Hyperbolic Partial Differential Equations
- August 2015
- J. Klicpera, Bachelor's thesis - Fault Parameterization and Rough Fault Earthquake Simulations in SeisSol
- August 2015
- F. Späth, Bachelor's thesis - In-situ Visualisierung von Tsunami-Simulationen auf verteilten Systemen
- August 2014
- L. Rannabauer, Bachelor's thesis - Runge-Kutta and ADER discontinuous Galerkin schemes for hyperbolic partial differential equations
- March 2014
- F. Gratl, Bachelor's thesis - Workflow automation of verification and performance tests for SeisSol
- December 2013
- L. Rannabauer, Bachelor's thesis - Q-bench: implementation and parametrisation of a routine to evaluate the quality of traffic information
- October 2013
- L. Spiegelberg, Bachelor's thesis - Ocean circulation studies in the Labrador Sea
- July 2013
- W. Hölzl, Bachelor's thesis - Vectorization and GPGPU-Acceleration of an Augmented Riemann Solver for the Shallow Water Equations
- June 2013
- M. Müller, Interdisciplinary Project - Global Tsunami Simulation on Distorted Adaptive Triangular-Grids
- March 2013
- A. Bakhtiari and D. Pinaev, BGCE Honours Project 2012 - Implementation of a 3D Model for Seismic Simulations on Adaptive Refined Meshes in PeanoClaw
- November 2012
- D. Gudu, Master's Thesis - Parallel Tsunami Simulations With Block-Structured Adaptive Mesh Refinement
- June 2012
- S. Rettenberger, Master's Thesis - A parallel server for adaptive geoinformation in computational fluid dynamics
